Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OCX16_RS06220 Genome accession   NZ_AP024730
Coordinates   1267850..1268623 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 59574     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262850..1273623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS06200 trmFO 1263194..1264501 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  OCX16_RS06205 xerC 1264918..1265814 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  OCX16_RS06210 hslV 1265811..1266356 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  OCX16_RS06215 hslU 1266422..1267825 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  OCX16_RS06220 codY 1267850..1268623 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OCX16_RS06225 - 1268674..1268766 (+) 93 WP_031788481.1 hypothetical protein -
  OCX16_RS06230 rpsB 1268965..1269732 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  OCX16_RS06235 - 1269766..1269879 (+) 114 WP_001789890.1 hypothetical protein -
  OCX16_RS06240 tsf 1269914..1270795 (+) 882 WP_000201387.1 translation elongation factor Ts -
  OCX16_RS06245 pyrH 1270932..1271654 (+) 723 WP_000057330.1 UMP kinase -
  OCX16_RS06250 frr 1271673..1272227 (+) 555 WP_001280006.1 ribosome recycling factor -
  OCX16_RS06255 - 1272600..1273370 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=75102 OCX16_RS06220 WP_000055337.1 1267850..1268623(+) (codY) [Staphylococcus aureus strain 59574]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=75102 OCX16_RS06220 WP_000055337.1 1267850..1268623(+) (codY) [Staphylococcus aureus strain 59574]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment