Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Vgang_RS09240 Genome accession   NZ_AP021869
Coordinates   2010011..2010529 (-) Length   172 a.a.
NCBI ID   WP_105900905.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005011..2015529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS09220 rpsP 2005172..2005420 (-) 249 WP_105900934.1 30S ribosomal protein S16 -
  Vgang_RS09225 ffh 2005679..2007058 (-) 1380 WP_105900908.1 signal recognition particle protein -
  Vgang_RS09230 - 2007477..2008271 (+) 795 WP_105900907.1 inner membrane protein YpjD -
  Vgang_RS09235 - 2008454..2009737 (+) 1284 WP_105900906.1 HlyC/CorC family transporter -
  Vgang_RS09240 luxS 2010011..2010529 (-) 519 WP_105900905.1 S-ribosylhomocysteine lyase Regulator
  Vgang_RS09245 - 2010564..2011175 (-) 612 WP_105900904.1 hypothetical protein -
  Vgang_RS09250 gshA 2011177..2012748 (-) 1572 WP_105900903.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19154.93 Da        Isoelectric Point: 4.5159

>NTDB_id=75102 Vgang_RS09240 WP_105900905.1 2010011..2010529(-) (luxS) [Vibrio gangliei strain DSM 104291]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFCIPNKDILSEKGIHTLEHLYAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMEDVLKVEDQNKIPELNEYQCGTYSMHSLNEAQEIAKQIIAAGISVNKNDELA
LPETMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=75102 Vgang_RS09240 WP_105900905.1 2010011..2010529(-) (luxS) [Vibrio gangliei strain DSM 104291]
ATGCCTCTATTAGATAGTTTTACCGTTGACCATACTCGTATGAATGCGCCAGCGGTGCGTGTTGCGAAAACAATGCAAAC
ACCAAAAGGGGACACAATTACTGTTTTCGATTTACGTTTTTGTATTCCAAACAAAGATATTCTGTCAGAAAAAGGCATCC
ATACGCTTGAGCACCTGTATGCTGGCTTTATGCGTGCTCACCTTAATGGCTCAGATGTCGAAATCATTGATATCTCACCA
ATGGGTTGCCGCACGGGTTTTTACATGAGCTTAATTGGTACGCCAAGCGAGCAACAAGTGGCTGATGCATGGTTAGCGGC
AATGGAAGATGTGCTAAAAGTTGAAGATCAGAACAAGATCCCTGAACTGAACGAATACCAATGTGGTACATATTCCATGC
ACTCACTCAATGAAGCGCAAGAGATCGCAAAGCAAATCATTGCAGCGGGTATTAGTGTGAACAAAAATGACGAGCTAGCG
TTGCCGGAAACGATGCTGCAAGAGCTAAAAGTAGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment