Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   OHM47_RS03505 Genome accession   NZ_CP109939
Coordinates   672306..673109 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain ID36054     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 667306..678109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS03480 (OHM47_03480) - 667735..668433 (-) 699 WP_002935835.1 amino acid ABC transporter permease -
  OHM47_RS03485 (OHM47_03485) - 668448..669287 (-) 840 WP_002935837.1 transporter substrate-binding domain-containing protein -
  OHM47_RS03490 (OHM47_03490) - 669298..670059 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  OHM47_RS03495 (OHM47_03495) micA 670253..670957 (+) 705 WP_002935840.1 response regulator YycF Regulator
  OHM47_RS03500 (OHM47_03500) micB 670950..672299 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  OHM47_RS03505 (OHM47_03505) vicX 672306..673109 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  OHM47_RS03510 (OHM47_03510) - 673670..674119 (+) 450 WP_043032937.1 ATP-binding cassette domain-containing protein -
  OHM47_RS03515 (OHM47_03515) pbp2b 674211..676286 (+) 2076 WP_043032936.1 penicillin-binding protein PBP2B -
  OHM47_RS03520 (OHM47_03520) recR 676295..676891 (+) 597 WP_002935848.1 recombination mediator RecR -
  OHM47_RS03525 (OHM47_03525) - 676996..678042 (+) 1047 WP_024394416.1 D-alanine--D-alanine ligase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=750931 OHM47_RS03505 WP_002935843.1 672306..673109(+) (vicX) [Streptococcus suis strain ID36054]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=750931 OHM47_RS03505 WP_002935843.1 672306..673109(+) (vicX) [Streptococcus suis strain ID36054]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772