Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA43_RS28880 Genome accession   NZ_CP109932
Coordinates   6216195..6216752 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6211195..6221752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA43_RS28860 (PALA43_05733) pilR 6212471..6213808 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA43_RS28865 (PALA43_05734) thiO 6213854..6214948 (-) 1095 WP_094009641.1 glycine oxidase ThiO -
  PALA43_RS28870 (PALA43_05735) - 6215083..6215592 (+) 510 WP_023088572.1 GspH/FimT family pseudopilin -
  PALA43_RS28875 (PALA43_05736) - 6215698..6216204 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA43_RS28880 (PALA43_05737) pilV 6216195..6216752 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA43_RS28885 (PALA43_05738) pilW 6216749..6217573 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA43_RS28890 (PALA43_05739) pilX 6217570..6218157 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA43_RS28895 (PALA43_05740) pilY1 6218169..6221660 (+) 3492 WP_213154590.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=750798 PALA43_RS28880 WP_003119423.1 6216195..6216752(+) (pilV) [Pseudomonas aeruginosa strain PALA43]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=750798 PALA43_RS28880 WP_003119423.1 6216195..6216752(+) (pilV) [Pseudomonas aeruginosa strain PALA43]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995