Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA42_RS07865 Genome accession   NZ_CP109931
Coordinates   1687446..1688003 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682446..1693003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA42_RS07850 (PALA42_01552) pilY1 1682538..1686029 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  PALA42_RS07855 (PALA42_01553) pilX 1686041..1686628 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA42_RS07860 (PALA42_01554) pilW 1686625..1687449 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PALA42_RS07865 (PALA42_01555) pilV 1687446..1688003 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA42_RS07870 (PALA42_01556) - 1687994..1688500 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA42_RS07875 (PALA42_01557) - 1688606..1689115 (-) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PALA42_RS07880 (PALA42_01558) thiO 1689250..1690344 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  PALA42_RS07885 (PALA42_01559) pilR 1690390..1691727 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=750743 PALA42_RS07865 WP_003119423.1 1687446..1688003(-) (pilV) [Pseudomonas aeruginosa strain PALA42]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=750743 PALA42_RS07865 WP_003119423.1 1687446..1688003(-) (pilV) [Pseudomonas aeruginosa strain PALA42]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995