Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEO84_RS09060 Genome accession   NZ_CP123328
Coordinates   1927231..1927860 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain AREA_499     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922231..1932860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO84_RS09040 (QEO84_09005) ycbZ 1922621..1924381 (-) 1761 WP_000156479.1 AAA family ATPase -
  QEO84_RS09045 (QEO84_09010) matP 1924567..1925019 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QEO84_RS09050 (QEO84_09015) ompA 1925094..1926146 (-) 1053 WP_000750418.1 porin OmpA -
  QEO84_RS09055 (QEO84_09020) sulA 1926503..1927012 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  QEO84_RS09060 (QEO84_09025) sxy/tfoX 1927231..1927860 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEO84_RS09065 (QEO84_09030) yccS 1927823..1929985 (-) 2163 WP_001550920.1 YccS family putative transporter -
  QEO84_RS09070 (QEO84_09035) yccF 1929995..1930441 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QEO84_RS09075 (QEO84_09040) helD 1930564..1932618 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=750628 QEO84_RS09060 WP_000839153.1 1927231..1927860(+) (sxy/tfoX) [Escherichia coli strain AREA_499]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=750628 QEO84_RS09060 WP_000839153.1 1927231..1927860(+) (sxy/tfoX) [Escherichia coli strain AREA_499]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1