Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OK025_RS07380 Genome accession   NZ_CP109907
Coordinates   1842631..1844016 (-) Length   461 a.a.
NCBI ID   WP_317668943.1    Uniprot ID   -
Organism   Sphingobacterium sp. UGAL515B_05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837631..1849016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK025_RS07365 (OK025_07365) nagB 1838503..1840431 (-) 1929 WP_201669845.1 glucosamine-6-phosphate deaminase -
  OK025_RS07370 (OK025_07370) - 1840573..1841721 (-) 1149 WP_317668941.1 methionine aminotransferase -
  OK025_RS07375 (OK025_07375) - 1841794..1842477 (+) 684 WP_317668942.1 TlpA disulfide reductase family protein -
  OK025_RS07380 (OK025_07380) radA 1842631..1844016 (-) 1386 WP_317668943.1 DNA repair protein RadA Machinery gene
  OK025_RS07385 (OK025_07385) - 1844258..1845418 (-) 1161 WP_317668944.1 dipeptidase -
  OK025_RS07390 (OK025_07390) - 1845415..1847139 (-) 1725 WP_317668945.1 serine hydrolase domain-containing protein -
  OK025_RS07395 (OK025_07395) xseA 1847355..1848641 (+) 1287 WP_317668946.1 exodeoxyribonuclease VII large subunit -
  OK025_RS07400 (OK025_07400) xseB 1848684..1848914 (+) 231 WP_317668947.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50600.99 Da        Isoelectric Point: 7.0182

>NTDB_id=750531 OK025_RS07380 WP_317668943.1 1842631..1844016(-) (radA) [Sphingobacterium sp. UGAL515B_05]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKTSSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQIETVQPNVIVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGMRPMMIEVQALVSN
SAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEV
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=750531 OK025_RS07380 WP_317668943.1 1842631..1844016(-) (radA) [Sphingobacterium sp. UGAL515B_05]
ATGGCAAAATCAAAATCAGCATACTTCTGTCAAAACTGTGGCTACGAGTCTCCCAAATGGATGGGACAATGCCCTTCTTG
TAAGCAATGGAATAGTTTTGTTGAGGAAGTCGTCGAAAAGACGAGCTCAAAAGTGCCCGAATGGCGCAGTTCTACCACAG
GTGGAAGCACGAAAAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAATTTAACCGGGTTCTTGGTGGTGGTATCGTTCCGGGATCCTTGGTACTTATCGGAGGCGAACCCGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCTTTATCGATCCCCCAAGTCAAGACACTTTATATATCTGGAGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCCGAGCGATTGTCACAATCTTCTAAAGCAAATTGTTATATCCTTACCGAGACATCGACTCAA
AATATTTTCAAGCAGATTGAGACAGTACAGCCGAATGTCATTGTCATAGATTCTATACAGACTTTACATTCCGCACAAAT
TGAATCGGCGCCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAATTGCTGCGGTTTGCAAAGGAAACCAGTACAC
CTGTTTTTATTGTAGGGCATATTACGAAGGACGGGTCTATAGCAGGCCCCAAGGTTTTAGAGCATATGGTGGATACGGTG
CTTCAATTCGAGGGTGATCGTCATCATGTATACCGAATTTTACGGGCTGTAAAAAATCGCTTTGGATCTGCTTCAGAACT
CGGTATTTATGAAATGCAGGGGTCGGGGCTAAGGGAAGTGTCGAATCCTTCGGAGATTATGATTTCCCAGCGCGATGAAC
CTGTTAGTGGTGTTTCCATTGCGGCGATGCTCGAAGGAATGCGCCCTATGATGATTGAAGTACAGGCACTGGTGAGTAAC
TCGGCGTTTGGAAATGCCCAACGCTCTTCTACAGGTTACGATACGAAGCGATTAAATATGCTGTTGGCTGTTTTGGAGAA
ACGCTTTGGTTTTAGGTTAAGTGCACAGGATGTGTTTTTGAATATTGCGGGTGGCTTGCGTGTTGAAGATCCTGCGATCG
ATTTGGCTGTTGTTGTTGCAATTATTTCTTCACAACAAGATATCGCGATTCGATCCAATCTGACTTTTGCCGGTGAGGTT
GGTTTATCGGGCGAGATAAGGGCCGTAAATCGCATTGAACAGCGTATACAGGAGGCCGAGAAGTTGGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGATGCTAAAAAATATAATATTGCCATTCGTCCGGTTGCCAAATTGGAGG
ACATCTTCAGTGCTTTGTTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

52.495

100

0.525
  radA Streptococcus mitis NCTC 12261

52.495

100

0.525
  radA Streptococcus pneumoniae Rx1

52.495

100

0.525
  radA Streptococcus pneumoniae R6

52.495

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.495

100

0.525
  radA Streptococcus mitis SK321

52.278

100

0.523
  radA Bacillus subtilis subsp. subtilis str. 168

53.725

96.095

0.516