Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEO86_RS22995 Genome accession   NZ_CP123321
Coordinates   4713311..4713940 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain AREA_504     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4708311..4718940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO86_RS22975 (QEO86_22905) ycbZ 4708711..4710471 (-) 1761 WP_000156498.1 AAA family ATPase -
  QEO86_RS22980 (QEO86_22910) matP 4710657..4711109 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QEO86_RS22985 (QEO86_22915) ompA 4711187..4712227 (-) 1041 WP_001313715.1 porin OmpA -
  QEO86_RS22990 (QEO86_22920) sulA 4712583..4713092 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  QEO86_RS22995 (QEO86_22925) sxy/tfoX 4713311..4713940 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEO86_RS23000 (QEO86_22930) yccS 4713903..4716065 (-) 2163 WP_000875041.1 YccS family putative transporter -
  QEO86_RS23005 (QEO86_22935) yccF 4716075..4716521 (-) 447 WP_001261236.1 YccF domain-containing protein -
  QEO86_RS23010 (QEO86_22940) helD 4716644..4718698 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=750511 QEO86_RS22995 WP_000839136.1 4713311..4713940(+) (sxy/tfoX) [Escherichia coli strain AREA_504]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=750511 QEO86_RS22995 WP_000839136.1 4713311..4713940(+) (sxy/tfoX) [Escherichia coli strain AREA_504]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99