Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OK026_RS08435 Genome accession   NZ_CP109905
Coordinates   1867288..1868712 (+) Length   474 a.a.
NCBI ID   WP_194426923.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain UGAL515B_03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1862288..1873712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK026_RS08410 (OK026_08410) - 1863920..1864900 (+) 981 WP_043632493.1 KpsF/GutQ family sugar-phosphate isomerase -
  OK026_RS08415 (OK026_08415) - 1864925..1865449 (+) 525 WP_043632491.1 HAD family hydrolase -
  OK026_RS08420 (OK026_08420) lptC 1865446..1866015 (+) 570 WP_019104255.1 LPS export ABC transporter periplasmic protein LptC -
  OK026_RS08425 (OK026_08425) lptA 1866005..1866559 (+) 555 WP_043591966.1 lipopolysaccharide transport periplasmic protein LptA -
  OK026_RS08430 (OK026_08430) lptB 1866556..1867284 (+) 729 WP_019104257.1 LPS export ABC transporter ATP-binding protein -
  OK026_RS08435 (OK026_08435) rpoN/rpoN1 1867288..1868712 (+) 1425 WP_194426923.1 RNA polymerase factor sigma-54 Machinery gene
  OK026_RS08440 (OK026_08440) hpf 1868780..1869094 (+) 315 WP_043632486.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OK026_RS08445 (OK026_08445) ptsN 1869216..1869677 (+) 462 WP_043632481.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OK026_RS08450 (OK026_08450) hprK 1869670..1870626 (+) 957 WP_019104261.1 HPr(Ser) kinase/phosphatase -
  OK026_RS08455 (OK026_08455) rapZ 1870607..1871449 (+) 843 WP_194426924.1 RNase adapter RapZ -
  OK026_RS08460 (OK026_08460) - 1871484..1872119 (+) 636 WP_194426925.1 flavin prenyltransferase UbiX -
  OK026_RS08465 (OK026_08465) - 1872165..1873655 (+) 1491 WP_194426926.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 52260.28 Da        Isoelectric Point: 4.7553

>NTDB_id=750487 OK026_RS08435 WP_194426923.1 1867288..1868712(+) (rpoN/rpoN1) [Chromobacterium haemolyticum strain UGAL515B_03]
MKQTLQLKVSQQLTLTPQLQQSIKLLQMSTLDLQTEVERFLLDNPLLERGDEAPQGEAADAAAGQRQDGPAETRDEASGD
DGERGAEAGELSDWGSGGRRGDGDDELDPMLNVPCPVSLREHLLAQLGEVALPTRDQAIVQLLIEELDDDGYLGQTLEDI
ASHLPLELEIEADELMIGLRLLQQFDPPGVGARSLPEALALQLQRLDPDEPQRELALAIVRDHLTLLGNRDYTRLKKQLS
VDDAALRAAQALIARLNPRPTAGFGASDTQYVIPDVSVRKRKGRWVAALNGGAVPRLRVNQMYARLLAENRGGNGEMSSR
LQEAKWLVKNIQQRFDTILKVAEAIVERQQSFFEHGEVAMRPLILRDIADELGLHESTVSRVTTQKYLLCPRGLFELKYF
FGSALETDSGGECSATAIKAHIRSLIDAESPSKPLSDSALVEALSKQGIQVARRTIAKYREAMQIPPVNQRKTL

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=750487 OK026_RS08435 WP_194426923.1 1867288..1868712(+) (rpoN/rpoN1) [Chromobacterium haemolyticum strain UGAL515B_03]
ATGAAACAGACCCTTCAGCTCAAGGTATCGCAGCAGCTGACCCTGACGCCGCAGCTGCAGCAGTCGATCAAGCTGCTGCA
GATGTCCACTCTCGACCTGCAGACCGAAGTCGAGCGCTTCTTGCTGGATAATCCCTTGCTTGAGCGCGGCGACGAAGCGC
CGCAGGGCGAAGCGGCTGACGCCGCCGCCGGCCAGCGACAGGACGGCCCCGCGGAAACCCGCGACGAGGCCTCCGGCGAC
GACGGCGAGCGCGGCGCCGAGGCCGGCGAACTGAGCGACTGGGGCAGCGGCGGCCGCCGCGGCGACGGCGACGACGAACT
GGACCCGATGCTGAACGTACCCTGTCCGGTCAGCCTGCGCGAGCACCTGCTGGCGCAACTGGGCGAAGTGGCGCTGCCCA
CGCGCGACCAGGCCATCGTTCAGTTGCTGATCGAAGAGCTGGACGACGACGGCTACCTAGGTCAAACGCTGGAAGACATC
GCCAGCCACCTGCCGCTGGAACTGGAAATCGAAGCCGACGAACTGATGATAGGCCTGCGCCTGCTGCAACAGTTCGACCC
GCCCGGCGTCGGCGCGCGCTCGCTGCCGGAAGCGCTGGCGCTGCAATTGCAGCGGCTGGATCCGGACGAGCCCCAGCGCG
AGCTGGCGCTGGCCATCGTCCGCGACCACCTGACCTTGCTGGGCAACAGAGACTACACCCGGCTGAAAAAGCAGCTGAGC
GTGGACGACGCCGCGCTGCGCGCCGCCCAGGCGCTGATCGCCCGCCTCAACCCCCGCCCCACCGCCGGTTTCGGCGCCAG
CGACACCCAATACGTGATCCCCGACGTCTCGGTCAGAAAGCGCAAGGGCCGCTGGGTGGCCGCCCTGAACGGCGGCGCCG
TGCCCAGGCTGCGCGTCAACCAGATGTACGCGCGGCTGCTGGCGGAAAACCGCGGCGGCAACGGCGAAATGTCCTCGCGT
CTGCAAGAGGCGAAATGGCTGGTGAAGAACATCCAGCAGCGATTTGACACTATCCTGAAAGTGGCGGAAGCTATCGTTGA
ACGGCAGCAATCGTTCTTTGAACACGGCGAAGTGGCCATGCGCCCGTTAATCCTTCGCGACATCGCGGACGAGCTGGGTT
TGCATGAATCCACGGTTTCCAGAGTGACCACCCAGAAATACCTGCTCTGCCCGCGCGGCCTGTTCGAGCTCAAGTATTTC
TTCGGCAGCGCGCTGGAAACCGACAGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCGCATATCCGCAGCCTGATAGA
CGCCGAATCGCCGAGCAAACCGCTGTCCGACAGCGCTCTGGTCGAAGCGCTGTCCAAACAGGGAATACAAGTTGCCAGAC
GCACGATAGCCAAGTATCGTGAAGCCATGCAGATACCGCCGGTCAACCAACGCAAGACGTTGTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(117-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.493

100

0.565