Detailed information NTG0750359

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEO83_RS08275
• Genome accession: NZ_CP123315
• Coordinates: 1637671..1638663 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AREA_R504
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1632671..1643663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEO83_RS08255 (QEO83_08210)	ygbM	1633302..1634078 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
QEO83_RS08260 (QEO83_08215)	ygbN	1634167..1635531 (+)	1365	WP_000104433.1	GntP family transporter	-
QEO83_RS08265 (QEO83_08220)	-	1635674..1636717 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
QEO83_RS08270 (QEO83_08225)	-	1636942..1637493 (+)	552	WP_001179442.1	flavodoxin family protein	-
QEO83_RS08275 (QEO83_08230)	rpoS	1637671..1638663 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEO83_RS08280 (QEO83_08235)	nlpD	1638726..1639820 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QEO83_RS08285 (QEO83_08240)	pcm	1640005..1640631 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QEO83_RS08290 (QEO83_08245)	surE	1640625..1641386 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QEO83_RS08295 (QEO83_08250)	truD	1641367..1642416 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
QEO83_RS08300 (QEO83_08255)	ispF	1642413..1642892 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEO83_RS08305 (QEO83_08260)	ispD	1642892..1643602 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=750359 QEO83_RS08275 WP_000081550.1 1637671..1638663(-) (rpoS) [Escherichia coli strain AREA_R504]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=750359 QEO83_RS08275 WP_000081550.1 1637671..1638663(-) (rpoS) [Escherichia coli strain AREA_R504]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715