Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OK229_RS21160 Genome accession   NZ_CP109872
Coordinates   4077967..4078713 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus cereus strain BC38B     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4072967..4083713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK229_RS21140 (OK229_04005) dnaG 4073737..4075533 (-) 1797 WP_000528216.1 DNA primase -
  OK229_RS21145 (OK229_04010) - 4075862..4076017 (-) 156 WP_206780186.1 hypothetical protein -
  OK229_RS21150 (OK229_04015) - 4076385..4077197 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  OK229_RS21155 (OK229_04020) - 4077227..4077859 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  OK229_RS21160 (OK229_04025) recO 4077967..4078713 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  OK229_RS21165 (OK229_04030) - 4078747..4078890 (-) 144 WP_000883924.1 YqzL family protein -
  OK229_RS21170 (OK229_04035) era 4079067..4079972 (-) 906 WP_001080241.1 GTPase Era -
  OK229_RS21175 (OK229_04040) - 4079965..4080363 (-) 399 WP_001086294.1 cytidine deaminase -
  OK229_RS21180 (OK229_04045) - 4080463..4080816 (-) 354 WP_072180475.1 diacylglycerol kinase family protein -
  OK229_RS21185 (OK229_04050) ybeY 4080813..4081283 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  OK229_RS21190 (OK229_04055) - 4081280..4083424 (-) 2145 WP_000946454.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=750338 OK229_RS21160 WP_000487010.1 4077967..4078713(-) (recO) [Bacillus cereus strain BC38B]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=750338 OK229_RS21160 WP_000487010.1 4077967..4078713(-) (recO) [Bacillus cereus strain BC38B]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTTTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGACACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGAGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552