Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OK229_RS09765 Genome accession   NZ_CP109872
Coordinates   1890554..1890841 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus cereus strain BC38B     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885554..1895841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK229_RS09745 (OK229_19570) - 1886730..1886927 (+) 198 WP_001048093.1 DUF4083 domain-containing protein -
  OK229_RS09750 (OK229_19575) - 1886959..1887420 (+) 462 WP_000024996.1 NUDIX hydrolase -
  OK229_RS09755 (OK229_19580) nadE 1887467..1888285 (-) 819 WP_264456695.1 ammonia-dependent NAD(+) synthetase -
  OK229_RS09760 (OK229_19585) - 1888557..1890437 (+) 1881 WP_264456697.1 ABC transporter permease -
  OK229_RS09765 (OK229_19590) abrB 1890554..1890841 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OK229_RS09770 (OK229_19595) - 1891116..1892066 (+) 951 WP_001089035.1 serine protease -
  OK229_RS09775 (OK229_19600) - 1892107..1892415 (-) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  OK229_RS09780 (OK229_19605) - 1892523..1893458 (+) 936 WP_000877936.1 aldo/keto reductase -
  OK229_RS09785 (OK229_19610) - 1893507..1894682 (+) 1176 WP_264456702.1 MFS transporter -
  OK229_RS09790 (OK229_19615) - 1894870..1895094 (-) 225 WP_000162601.1 hypothetical protein -
  OK229_RS09795 (OK229_19620) - 1895179..1895526 (-) 348 WP_000426313.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=750326 OK229_RS09765 WP_000648330.1 1890554..1890841(+) (abrB) [Bacillus cereus strain BC38B]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=750326 OK229_RS09765 WP_000648330.1 1890554..1890841(+) (abrB) [Bacillus cereus strain BC38B]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCCTTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516