Detailed information NTG0750187

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEO90_RS05575
• Genome accession: NZ_CP123311
• Coordinates: 1156038..1157030 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AREA_R505
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1151038..1162030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEO90_RS05545 (QEO90_05535)	ispD	1151099..1151809 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QEO90_RS05550 (QEO90_05540)	ispF	1151809..1152288 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEO90_RS05555 (QEO90_05545)	truD	1152285..1153334 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QEO90_RS05560 (QEO90_05550)	surE	1153315..1154076 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QEO90_RS05565 (QEO90_05555)	pcm	1154070..1154696 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QEO90_RS05570 (QEO90_05560)	nlpD	1154881..1155975 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QEO90_RS05575 (QEO90_05565)	rpoS	1156038..1157030 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEO90_RS05580 (QEO90_05570)	-	1157201..1157752 (-)	552	WP_001179444.1	flavodoxin family protein	-
QEO90_RS05585 (QEO90_05575)	-	1157977..1159020 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QEO90_RS05590 (QEO90_05580)	ygbN	1159163..1160527 (-)	1365	WP_000104433.1	GntP family transporter	-
QEO90_RS05595 (QEO90_05585)	ygbM	1160616..1161392 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=750187 QEO90_RS05575 WP_000081550.1 1156038..1157030(+) (rpoS) [Escherichia coli strain AREA_R505]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=750187 QEO90_RS05575 WP_000081550.1 1156038..1157030(+) (rpoS) [Escherichia coli strain AREA_R505]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715