Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QEO87_RS18295 Genome accession   NZ_CP123310
Coordinates   3708229..3708834 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AREA_C483     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3703229..3713834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO87_RS18275 (QEO87_18255) aes 3703383..3704351 (+) 969 WP_000801858.1 acetyl esterase -
  QEO87_RS18280 (QEO87_18260) hemH 3704326..3705288 (-) 963 WP_001250108.1 ferrochelatase -
  QEO87_RS18285 (QEO87_18265) adk 3705420..3706064 (-) 645 WP_001220233.1 adenylate kinase -
  QEO87_RS18290 (QEO87_18270) htpG 3706245..3708119 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QEO87_RS18295 (QEO87_18275) recR 3708229..3708834 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QEO87_RS18300 (QEO87_18280) ybaB 3708834..3709163 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QEO87_RS18305 (QEO87_18285) dnaX 3709216..3711147 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QEO87_RS18310 (QEO87_18290) apt 3711276..3711827 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QEO87_RS18315 (QEO87_18295) ybaN 3711980..3712357 (-) 378 WP_001188905.1 DUF454 family protein -
  QEO87_RS18320 (QEO87_18300) priC 3712427..3712954 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  QEO87_RS18325 (QEO87_18305) rsmS 3712968..3713129 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=750133 QEO87_RS18295 WP_001195025.1 3708229..3708834(-) (recR) [Escherichia coli strain AREA_C483]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=750133 QEO87_RS18295 WP_001195025.1 3708229..3708834(-) (recR) [Escherichia coli strain AREA_C483]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443