Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEO87_RS15815 Genome accession   NZ_CP123310
Coordinates   3188143..3188772 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain AREA_C483     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3183143..3193772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEO87_RS15800 (QEO87_15765) helD 3183385..3185439 (-) 2055 WP_000420536.1 DNA helicase IV -
  QEO87_RS15805 (QEO87_15770) yccF 3185562..3186008 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEO87_RS15810 (QEO87_15775) yccS 3186018..3188180 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QEO87_RS15815 (QEO87_15780) sxy/tfoX 3188143..3188772 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEO87_RS15820 (QEO87_15785) sulA 3188991..3189500 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEO87_RS15825 (QEO87_15790) ompA 3189857..3190909 (+) 1053 WP_001307702.1 porin OmpA -
  QEO87_RS15830 (QEO87_15795) matP 3190984..3191436 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QEO87_RS15835 (QEO87_15800) ycbZ 3191622..3193382 (+) 1761 WP_000156516.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=750126 QEO87_RS15815 WP_000839153.1 3188143..3188772(-) (sxy/tfoX) [Escherichia coli strain AREA_C483]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=750126 QEO87_RS15815 WP_000839153.1 3188143..3188772(-) (sxy/tfoX) [Escherichia coli strain AREA_C483]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1