Detailed information NTG0750099

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEO87_RS05280
• Genome accession: NZ_CP123310
• Coordinates: 1096773..1097765 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AREA_C483
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1091773..1102765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEO87_RS05250 (QEO87_05255)	ispD	1091834..1092544 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QEO87_RS05255 (QEO87_05260)	ispF	1092544..1093023 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEO87_RS05260 (QEO87_05265)	truD	1093020..1094069 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QEO87_RS05265 (QEO87_05270)	surE	1094050..1094811 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QEO87_RS05270 (QEO87_05275)	pcm	1094805..1095431 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QEO87_RS05275 (QEO87_05280)	nlpD	1095616..1096710 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QEO87_RS05280 (QEO87_05285)	rpoS	1096773..1097765 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEO87_RS05285 (QEO87_05290)	ygbN	1097859..1099223 (-)	1365	WP_000104459.1	GntP family transporter	-
QEO87_RS05290 (QEO87_05295)	ygbM	1099312..1100088 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QEO87_RS05295 (QEO87_05300)	ygbL	1100093..1100731 (-)	639	WP_001278994.1	aldolase	-
QEO87_RS05300 (QEO87_05305)	otnK	1100728..1101990 (-)	1263	WP_021553822.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=750099 QEO87_RS05280 WP_000081550.1 1096773..1097765(+) (rpoS) [Escherichia coli strain AREA_C483]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=750099 QEO87_RS05280 WP_000081550.1 1096773..1097765(+) (rpoS) [Escherichia coli strain AREA_C483]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715