Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA34_RS26805 Genome accession   NZ_CP109849
Coordinates   5712038..5712595 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5707038..5717595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA34_RS26785 (PALA34_05298) pilR 5708314..5709651 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA34_RS26790 (PALA34_05299) thiO 5709697..5710791 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  PALA34_RS26795 (PALA34_05300) - 5710926..5711435 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PALA34_RS26800 (PALA34_05301) - 5711541..5712047 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA34_RS26805 (PALA34_05302) pilV 5712038..5712595 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PALA34_RS26810 (PALA34_05303) pilW 5712592..5713416 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA34_RS26815 (PALA34_05304) pilX 5713413..5714000 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA34_RS26820 (PALA34_05305) pilY1 5714012..5717503 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=750091 PALA34_RS26805 WP_003119423.1 5712038..5712595(+) (pilV) [Pseudomonas aeruginosa strain PALA34]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=750091 PALA34_RS26805 WP_003119423.1 5712038..5712595(+) (pilV) [Pseudomonas aeruginosa strain PALA34]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995