Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   OCX18_RS04575 Genome accession   NZ_AP024728
Coordinates   957168..958154 (+) Length   328 a.a.
NCBI ID   WP_000959293.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952168..963154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX18_RS04550 opp4B 952381..953343 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  OCX18_RS04555 opp4C 953355..954236 (+) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  OCX18_RS04560 trpS 954278..955267 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  OCX18_RS04565 spxA 955562..955957 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  OCX18_RS04570 mecA 956328..957047 (+) 720 WP_001217728.1 adaptor protein MecA -
  OCX18_RS04575 coiA 957168..958154 (+) 987 WP_000959293.1 competence protein CoiA Machinery gene
  OCX18_RS04580 pepF 958202..960010 (+) 1809 WP_000082725.1 oligoendopeptidase F Regulator
  OCX18_RS04585 yjbH 960470..961276 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  OCX18_RS04590 - 961299..961664 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  OCX18_RS04595 - 961768..962361 (-) 594 WP_000224612.1 CYTH domain-containing protein -
  OCX18_RS04600 - 962547..962894 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38898.54 Da        Isoelectric Point: 9.7732

>NTDB_id=75005 OCX18_RS04575 WP_000959293.1 957168..958154(+) (coiA) [Staphylococcus aureus strain 59553]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=75005 OCX18_RS04575 WP_000959293.1 957168..958154(+) (coiA) [Staphylococcus aureus strain 59553]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

100

100

1
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment