Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA29_RS26530 Genome accession   NZ_CP109843
Coordinates   5524275..5524832 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PALA29     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5519275..5529832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA29_RS26510 (PALA29_05232) pilR 5520551..5521888 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA29_RS26515 (PALA29_05233) thiO 5521934..5523028 (-) 1095 WP_023114840.1 glycine oxidase ThiO -
  PALA29_RS26520 (PALA29_05234) - 5523163..5523672 (+) 510 WP_017002065.1 GspH/FimT family pseudopilin -
  PALA29_RS26525 (PALA29_05235) - 5523778..5524284 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA29_RS26530 (PALA29_05236) pilV 5524275..5524832 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PALA29_RS26535 (PALA29_05237) pilW 5524829..5525653 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PALA29_RS26540 (PALA29_05238) pilX 5525650..5526237 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  PALA29_RS26545 (PALA29_05239) pilY1 5526249..5529740 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=749967 PALA29_RS26530 WP_003094697.1 5524275..5524832(+) (pilV) [Pseudomonas aeruginosa strain PALA29]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=749967 PALA29_RS26530 WP_003094697.1 5524275..5524832(+) (pilV) [Pseudomonas aeruginosa strain PALA29]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978