Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4697_RS14660 Genome accession   NZ_CP123260
Coordinates   2988196..2988825 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YZLc4-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2983196..2993825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4697_RS14645 (N4697_014650) helD 2983438..2985492 (-) 2055 WP_001297106.1 DNA helicase IV -
  N4697_RS14650 (N4697_014655) yccF 2985615..2986061 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N4697_RS14655 (N4697_014660) yccS 2986071..2988233 (+) 2163 WP_000875015.1 YccS family putative transporter -
  N4697_RS14660 (N4697_014665) sxy/tfoX 2988196..2988825 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N4697_RS14665 (N4697_014670) sulA 2989044..2989553 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N4697_RS14670 (N4697_014675) ompA 2989910..2990962 (+) 1053 WP_000750419.1 porin OmpA -
  N4697_RS14675 (N4697_014680) matP 2991038..2991490 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N4697_RS14680 (N4697_014685) ycbZ 2991676..2993436 (+) 1761 WP_063625537.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=749964 N4697_RS14660 WP_000839153.1 2988196..2988825(-) (sxy/tfoX) [Escherichia coli strain YZLc4-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=749964 N4697_RS14660 WP_000839153.1 2988196..2988825(-) (sxy/tfoX) [Escherichia coli strain YZLc4-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1