Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OHJ24_RS18215 Genome accession   NZ_CP109836
Coordinates   3746321..3746794 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain Z198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3741321..3751794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHJ24_RS18200 (OHJ24_18210) pilX 3743950..3744768 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OHJ24_RS18205 (OHJ24_18215) pilW 3744765..3745766 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OHJ24_RS18210 (OHJ24_18220) pilV 3745767..3746327 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OHJ24_RS18215 (OHJ24_18225) fimU 3746321..3746794 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OHJ24_RS18220 (OHJ24_18230) ispH 3746964..3747914 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OHJ24_RS18225 (OHJ24_18235) gmk 3748037..3748666 (+) 630 WP_000015937.1 guanylate kinase -
  OHJ24_RS18230 (OHJ24_18240) rpoZ 3748739..3749017 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OHJ24_RS18235 (OHJ24_18245) - 3749056..3749185 (+) 130 Protein_3559 hypothetical protein -
  OHJ24_RS18240 (OHJ24_18250) - 3749225..3751330 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=749898 OHJ24_RS18215 WP_001214061.1 3746321..3746794(-) (fimU) [Acinetobacter baumannii strain Z198]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=749898 OHJ24_RS18215 WP_001214061.1 3746321..3746794(-) (fimU) [Acinetobacter baumannii strain Z198]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987