Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   N4680_RS17885 Genome accession   NZ_CP123255
Coordinates   3691455..3691931 (-) Length   158 a.a.
NCBI ID   WP_001424026.1    Uniprot ID   -
Organism   Escherichia coli strain YZMc17-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3686455..3696931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4680_RS17855 (N4680_17860) paoD 3688038..3688994 (+) 957 WP_000121359.1 molybdenum cofactor insertion chaperone PaoD -
  N4680_RS17860 (N4680_17865) - 3689045..3689383 (+) 339 Protein_3495 LysR substrate-binding domain-containing protein -
  N4680_RS17865 (N4680_17870) - 3689704..3690072 (-) 369 WP_001094398.1 TA system toxin CbtA family protein -
  N4680_RS17870 (N4680_17875) - 3690093..3690451 (-) 359 Protein_3497 type IV toxin-antitoxin system YeeU family antitoxin -
  N4680_RS17875 (N4680_17880) - 3690502..3691146 (-) 645 WP_000086755.1 hypothetical protein -
  N4680_RS17880 (N4680_17885) - 3691165..3691386 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  N4680_RS17885 (N4680_17890) radC 3691455..3691931 (-) 477 WP_001424026.1 RadC family protein Machinery gene
  N4680_RS17890 (N4680_17895) - 3691947..3692432 (-) 486 WP_001586019.1 antirestriction protein -
  N4680_RS17895 (N4680_17900) - 3692524..3693342 (-) 819 WP_001234397.1 DUF932 domain-containing protein -
  N4680_RS17900 (N4680_17905) - 3693432..3693665 (-) 234 WP_001117566.1 DUF905 family protein -
  N4680_RS17905 (N4680_17910) - 3693736..3696582 (-) 2847 WP_106470481.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17683.27 Da        Isoelectric Point: 6.9859

>NTDB_id=749893 N4680_RS17885 WP_001424026.1 3691455..3691931(-) (radC) [Escherichia coli strain YZMc17-1]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=749893 N4680_RS17885 WP_001424026.1 3691455..3691931(-) (radC) [Escherichia coli strain YZMc17-1]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386