Detailed information NTG0749855

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N4680_RS05335
• Genome accession: NZ_CP123255
• Coordinates: 1090705..1091697 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain YZMc17-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1085705..1096697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4680_RS05305 (N4680_05305)	ispD	1085766..1086476 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N4680_RS05310 (N4680_05310)	ispF	1086476..1086955 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N4680_RS05315 (N4680_05315)	truD	1086952..1088001 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
N4680_RS05320 (N4680_05320)	surE	1087982..1088743 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N4680_RS05325 (N4680_05325)	pcm	1088737..1089363 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N4680_RS05330 (N4680_05330)	nlpD	1089548..1090642 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
N4680_RS05335 (N4680_05335)	rpoS	1090705..1091697 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N4680_RS05340 (N4680_05340)	-	1091818..1092225 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
N4680_RS05345 (N4680_05345)	-	1092372..1092965 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
N4680_RS05350 (N4680_05350)	-	1092965..1094392 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
N4680_RS05355 (N4680_05355)	-	1094403..1094639 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
N4680_RS05360 (N4680_05360)	ygbN	1094678..1096042 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=749855 N4680_RS05335 WP_000081550.1 1090705..1091697(+) (rpoS) [Escherichia coli strain YZMc17-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=749855 N4680_RS05335 WP_000081550.1 1090705..1091697(+) (rpoS) [Escherichia coli strain YZMc17-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715