Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA26_RS25880 Genome accession   NZ_CP109835
Coordinates   5528519..5529043 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PALA26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5523519..5534043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA26_RS25860 (PALA26_05113) pilR 5524781..5526118 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA26_RS25865 (PALA26_05114) thiO 5526164..5527258 (-) 1095 WP_003141551.1 glycine oxidase ThiO -
  PALA26_RS25870 (PALA26_05115) - 5527398..5527898 (+) 501 WP_016254062.1 GspH/FimT family pseudopilin -
  PALA26_RS25875 (PALA26_05116) - 5528021..5528509 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PALA26_RS25880 (PALA26_05117) pilV 5528519..5529043 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PALA26_RS25885 (PALA26_05118) - 5529052..5529867 (+) 816 WP_016254061.1 PilW family protein -
  PALA26_RS25890 (PALA26_05119) - 5529864..5530469 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  PALA26_RS25895 (PALA26_05120) - 5530483..5533959 (+) 3477 WP_003141555.1 type IV pilus biogenesis factor PilY1 -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=749849 PALA26_RS25880 WP_003116261.1 5528519..5529043(+) (pilV) [Pseudomonas aeruginosa strain PALA26]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=749849 PALA26_RS25880 WP_003116261.1 5528519..5529043(+) (pilV) [Pseudomonas aeruginosa strain PALA26]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598