Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N4683_RS16930 Genome accession   NZ_CP123247
Coordinates   3495540..3496145 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YZMc10-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3490540..3501145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4683_RS16910 (N4683_016910) aes 3490577..3491536 (+) 960 WP_000801832.1 acetyl esterase -
  N4683_RS16915 (N4683_016915) hemH 3491533..3492495 (-) 963 WP_001250088.1 ferrochelatase -
  N4683_RS16920 (N4683_016920) adk 3492731..3493375 (-) 645 WP_001220233.1 adenylate kinase -
  N4683_RS16925 (N4683_016925) htpG 3493556..3495430 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  N4683_RS16930 (N4683_016930) recR 3495540..3496145 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N4683_RS16935 (N4683_016935) ybaB 3496145..3496474 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N4683_RS16940 (N4683_016940) dnaX 3496527..3498458 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  N4683_RS16945 (N4683_016945) apt 3498587..3499138 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N4683_RS16950 (N4683_016950) ybaN 3499291..3499668 (-) 378 WP_001188905.1 DUF454 family protein -
  N4683_RS16955 (N4683_016955) priC 3499738..3500265 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  N4683_RS16960 (N4683_016960) rsmS 3500279..3500440 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=749807 N4683_RS16930 WP_001195025.1 3495540..3496145(-) (recR) [Escherichia coli strain YZMc10-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=749807 N4683_RS16930 WP_001195025.1 3495540..3496145(-) (recR) [Escherichia coli strain YZMc10-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443