Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N4725_RS18140 Genome accession   NZ_CP123240
Coordinates   3740680..3741285 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YZLc1-3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3735680..3746285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4725_RS18120 (N4725_18120) aes 3735821..3736780 (+) 960 WP_000764314.1 acetyl esterase -
  N4725_RS18125 (N4725_18125) hemH 3736777..3737739 (-) 963 WP_001250117.1 ferrochelatase -
  N4725_RS18130 (N4725_18130) adk 3737871..3738515 (-) 645 WP_001220233.1 adenylate kinase -
  N4725_RS18135 (N4725_18135) htpG 3738696..3740570 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  N4725_RS18140 (N4725_18140) recR 3740680..3741285 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N4725_RS18145 (N4725_18145) ybaB 3741285..3741614 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N4725_RS18150 (N4725_18150) dnaX 3741667..3743598 (-) 1932 WP_106475075.1 DNA polymerase III subunit gamma/tau -
  N4725_RS18155 (N4725_18155) apt 3743727..3744278 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N4725_RS18160 (N4725_18160) ybaN 3744431..3744808 (-) 378 WP_001188905.1 DUF454 family protein -
  N4725_RS18165 (N4725_18165) priC 3744878..3745405 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  N4725_RS18170 (N4725_18170) rsmS 3745419..3745583 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=749643 N4725_RS18140 WP_001195025.1 3740680..3741285(-) (recR) [Escherichia coli strain YZLc1-3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=749643 N4725_RS18140 WP_001195025.1 3740680..3741285(-) (recR) [Escherichia coli strain YZLc1-3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443