Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N4725_RS15420 Genome accession   NZ_CP123240
Coordinates   3150732..3151361 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain YZLc1-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145732..3156361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4725_RS15405 (N4725_15405) helD 3145974..3148028 (-) 2055 WP_021561301.1 DNA helicase IV -
  N4725_RS15410 (N4725_15410) yccF 3148151..3148597 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N4725_RS15415 (N4725_15415) yccS 3148607..3150769 (+) 2163 WP_001550920.1 YccS family putative transporter -
  N4725_RS15420 (N4725_15420) sxy/tfoX 3150732..3151361 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N4725_RS15425 (N4725_15425) sulA 3151580..3152089 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  N4725_RS15430 (N4725_15430) ompA 3152446..3153498 (+) 1053 WP_000750418.1 porin OmpA -
  N4725_RS15435 (N4725_15435) matP 3153573..3154025 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N4725_RS15440 (N4725_15440) ycbZ 3154211..3155971 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=749636 N4725_RS15420 WP_000839153.1 3150732..3151361(-) (sxy/tfoX) [Escherichia coli strain YZLc1-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=749636 N4725_RS15420 WP_000839153.1 3150732..3151361(-) (sxy/tfoX) [Escherichia coli strain YZLc1-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1