Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OH129_RS05825 Genome accession   NZ_CP109819
Coordinates   1145909..1146679 (-) Length   256 a.a.
NCBI ID   WP_052777121.1    Uniprot ID   A0A5Y7F2Y7
Organism   Campylobacter coli strain CC21NB04a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1140909..1151679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS05795 (OH129_05795) aspS 1141045..1142796 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  OH129_RS05800 (OH129_05800) - 1142793..1143368 (+) 576 WP_002776379.1 adenylate kinase -
  OH129_RS05805 (OH129_05805) ppa 1143378..1143896 (+) 519 WP_002776378.1 inorganic diphosphatase -
  OH129_RS05810 (OH129_05810) msrA 1143944..1144444 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OH129_RS05815 (OH129_05815) - 1144667..1145521 (-) 855 WP_370530364.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OH129_RS05820 (OH129_05820) ruvX 1145532..1145912 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  OH129_RS05825 (OH129_05825) dprA 1145909..1146679 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  OH129_RS05830 (OH129_05830) - 1146669..1147721 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  OH129_RS05835 (OH129_05835) ilvC 1147724..1148746 (-) 1023 WP_233908966.1 ketol-acid reductoisomerase -
  OH129_RS05840 (OH129_05840) - 1148869..1150803 (+) 1935 WP_002822670.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28844.25 Da        Isoelectric Point: 5.0727

>NTDB_id=749606 OH129_RS05825 WP_052777121.1 1145909..1146679(-) (dprA) [Campylobacter coli strain CC21NB04a]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=749606 OH129_RS05825 WP_052777121.1 1145909..1146679(-) (dprA) [Campylobacter coli strain CC21NB04a]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCTCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y7F2Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449