Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OH129_RS02160 Genome accession   NZ_CP109819
Coordinates   431955..432923 (-) Length   322 a.a.
NCBI ID   WP_002829485.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB04a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426955..437923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS02140 (OH129_02140) - 428470..429102 (-) 633 WP_216145792.1 hypothetical protein -
  OH129_RS02145 (OH129_02145) - 429268..430257 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  OH129_RS02150 (OH129_02150) - 430272..431027 (-) 756 WP_002780521.1 ABC transporter ATP-binding protein -
  OH129_RS02155 (OH129_02155) - 431024..431962 (-) 939 WP_002825228.1 iron chelate uptake ABC transporter family permease subunit -
  OH129_RS02160 (OH129_02160) ceuB 431955..432923 (-) 969 WP_002829485.1 ABC transporter permease Machinery gene
  OH129_RS02165 (OH129_02165) - 433056..433949 (-) 894 WP_234888882.1 phospholipase A -
  OH129_RS02170 (OH129_02170) - 434048..434623 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  OH129_RS02175 (OH129_02175) - 434686..435993 (+) 1308 WP_002789627.1 NFACT family protein -
  OH129_RS02180 (OH129_02180) - 435996..436334 (+) 339 WP_002777761.1 hypothetical protein -
  OH129_RS02185 (OH129_02185) - 436343..437068 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35463.34 Da        Isoelectric Point: 9.5069

>NTDB_id=749595 OH129_RS02160 WP_002829485.1 431955..432923(-) (ceuB) [Campylobacter coli strain CC21NB04a]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=749595 OH129_RS02160 WP_002829485.1 431955..432923(-) (ceuB) [Campylobacter coli strain CC21NB04a]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894