Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   OH129_RS01860 Genome accession   NZ_CP109819
Coordinates   370009..371193 (+) Length   394 a.a.
NCBI ID   WP_264378535.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB04a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 365009..376193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS01845 (OH129_01845) - 365590..366282 (+) 693 WP_264378532.1 nucleotidyltransferase family protein -
  OH129_RS01850 (OH129_01850) - 366327..367949 (+) 1623 WP_264378589.1 hypothetical protein -
  OH129_RS01855 (OH129_01855) - 367985..370012 (+) 2028 WP_264378534.1 capsular polysaccharide biosynthesis protein -
  OH129_RS01860 (OH129_01860) kpsS 370009..371193 (+) 1185 WP_264378535.1 capsule biosynthesis protein Regulator
  OH129_RS01865 (OH129_01865) - 371261..372382 (+) 1122 WP_264378536.1 DUF829 domain-containing protein -
  OH129_RS01870 (OH129_01870) - 372379..373749 (+) 1371 WP_002783822.1 cytochrome P450 -
  OH129_RS01875 (OH129_01875) - 373746..374168 (+) 423 WP_002779166.1 hypothetical protein -
  OH129_RS01880 (OH129_01880) acpS 374171..374518 (-) 348 WP_002779165.1 holo-ACP synthase -
  OH129_RS01885 (OH129_01885) fliL 374518..375054 (-) 537 WP_233908813.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46621.28 Da        Isoelectric Point: 9.9737

>NTDB_id=749593 OH129_RS01860 WP_264378535.1 370009..371193(+) (kpsS) [Campylobacter coli strain CC21NB04a]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNISTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=749593 OH129_RS01860 WP_264378535.1 370009..371193(+) (kpsS) [Campylobacter coli strain CC21NB04a]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGAACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTACGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATTTCTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAATGCTTTAGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.817

100

0.878