Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   OH130_RS01855 Genome accession   NZ_CP109817
Coordinates   369882..371066 (+) Length   394 a.a.
NCBI ID   WP_264378535.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB01a     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 364882..376066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH130_RS01840 (OH130_01840) - 365462..366154 (+) 693 WP_264378532.1 nucleotidyltransferase family protein -
  OH130_RS01845 (OH130_01845) - 366199..367785 (+) 1587 WP_264378533.1 hypothetical protein -
  OH130_RS01850 (OH130_01850) - 367858..369885 (+) 2028 WP_264378534.1 capsular polysaccharide biosynthesis protein -
  OH130_RS01855 (OH130_01855) kpsS 369882..371066 (+) 1185 WP_264378535.1 capsule biosynthesis protein Regulator
  OH130_RS01860 (OH130_01860) - 371134..372255 (+) 1122 WP_264378536.1 DUF829 domain-containing protein -
  OH130_RS01865 (OH130_01865) - 372252..373622 (+) 1371 WP_002783822.1 cytochrome P450 -
  OH130_RS01870 (OH130_01870) - 373619..374041 (+) 423 WP_002779166.1 hypothetical protein -
  OH130_RS01875 (OH130_01875) acpS 374044..374391 (-) 348 WP_002779165.1 holo-ACP synthase -
  OH130_RS01880 (OH130_01880) fliL 374391..374927 (-) 537 WP_233908813.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46621.28 Da        Isoelectric Point: 9.9737

>NTDB_id=749567 OH130_RS01855 WP_264378535.1 369882..371066(+) (kpsS) [Campylobacter coli strain CC21NB01a]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNISTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=749567 OH130_RS01855 WP_264378535.1 369882..371066(+) (kpsS) [Campylobacter coli strain CC21NB01a]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGAACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTACGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATTTCTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCTACTCTTTTAAAAAATGCTTTAGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.817

100

0.878