Detailed information NTG0749563

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: OH130_RS01640
• Genome accession: NZ_CP109817
• Coordinates: 325161..326579 (+)
• Length: 472 a.a.
• NCBI ID: WP_002779315.1
• Uniprot ID: -
• Organism: Campylobacter coli strain CC21NB01a
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 320161..331579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH130_RS01625 (OH130_01625)	-	321101..321184 (+)	84	Protein_314	HAD family hydrolase	-
OH130_RS01630 (OH130_01630)	nifJ	321288..324848 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
OH130_RS01635 (OH130_01635)	ctsR	324872..325183 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
OH130_RS01640 (OH130_01640)	ctsD	325161..326579 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
OH130_RS01645 (OH130_01645)	ctsP	326572..327168 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
OH130_RS01650 (OH130_01650)	-	327165..327752 (+)	588	WP_002810825.1	CDC27 family protein	-
OH130_RS01655 (OH130_01655)	ctsE	327745..329307 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
OH130_RS01660 (OH130_01660)	ctsF	329294..330469 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
OH130_RS01665 (OH130_01665)	-	330466..331230 (-)	765	WP_002781157.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53513.05 Da
• Isoelectric Point: 6.5150

>NTDB_id=749563 OH130_RS01640 WP_002779315.1 325161..326579(+) (ctsD) [Campylobacter coli strain CC21NB01a]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=749563 OH130_RS01640 WP_002779315.1 325161..326579(+) (ctsD) [Campylobacter coli strain CC21NB01a]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGACAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.72	100	0.807