Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QET42_RS17285 Genome accession   NZ_CP123237
Coordinates   3492870..3493475 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 4588     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3487870..3498475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QET42_RS17265 (QET42_17265) aes 3487907..3488866 (+) 960 WP_000801813.1 acetyl esterase -
  QET42_RS17270 (QET42_17270) hemH 3488863..3489825 (-) 963 WP_001250103.1 ferrochelatase -
  QET42_RS17275 (QET42_17275) adk 3490061..3490705 (-) 645 WP_001220233.1 adenylate kinase -
  QET42_RS17280 (QET42_17280) htpG 3490886..3492760 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QET42_RS17285 (QET42_17285) recR 3492870..3493475 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QET42_RS17290 (QET42_17290) ybaB 3493475..3493804 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QET42_RS17295 (QET42_17295) dnaX 3493857..3495788 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QET42_RS17300 (QET42_17300) apt 3495917..3496468 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QET42_RS17305 (QET42_17305) ybaN 3496621..3496998 (-) 378 WP_001188905.1 DUF454 family protein -
  QET42_RS17310 (QET42_17310) priC 3497068..3497595 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QET42_RS17315 (QET42_17315) rsmS 3497609..3497770 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=749560 QET42_RS17285 WP_001195025.1 3492870..3493475(-) (recR) [Escherichia coli strain 4588]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=749560 QET42_RS17285 WP_001195025.1 3492870..3493475(-) (recR) [Escherichia coli strain 4588]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443