Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FOF60_RS16790 Genome accession   NZ_CP109811
Coordinates   3268093..3269784 (-) Length   563 a.a.
NCBI ID   WP_192470726.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3263093..3274784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS16765 (FOF60_16765) - 3263928..3264191 (+) 264 WP_192470722.1 DUF2627 domain-containing protein -
  FOF60_RS16770 (FOF60_16770) - 3264197..3264931 (-) 735 WP_192470723.1 glycerophosphodiester phosphodiesterase -
  FOF60_RS16775 (FOF60_16775) - 3264973..3265113 (+) 141 WP_023627393.1 YycC family protein -
  FOF60_RS16780 (FOF60_16780) spo0A 3265327..3266121 (-) 795 WP_192470724.1 sporulation transcription factor Spo0A -
  FOF60_RS16785 (FOF60_16785) spoIVB 3266682..3267968 (-) 1287 WP_192470725.1 SpoIVB peptidase -
  FOF60_RS16790 (FOF60_16790) recN 3268093..3269784 (-) 1692 WP_192470726.1 DNA repair protein RecN Machinery gene
  FOF60_RS16795 (FOF60_16795) ahrC 3269801..3270250 (-) 450 WP_041967930.1 transcriptional regulator AhrC/ArgR -
  FOF60_RS16800 (FOF60_16800) - 3270471..3271319 (-) 849 WP_192470727.1 TlyA family RNA methyltransferase -
  FOF60_RS16805 (FOF60_16805) dxs 3271323..3273215 (-) 1893 WP_192470728.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FOF60_RS16810 (FOF60_16810) - 3273642..3274466 (-) 825 WP_319801538.1 farnesyl diphosphate synthase -
  FOF60_RS16815 (FOF60_16815) - 3274469..3274702 (-) 234 WP_192470729.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63488.06 Da        Isoelectric Point: 5.2036

>NTDB_id=749500 FOF60_RS16790 WP_192470726.1 3268093..3269784(-) (recN) [Mesobacillus jeotgali strain SBJS01]
MLNELSIRNFAIIESLSVSFNKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEDKAEIEGLFHLEGENHPSYAK
AAEFGIEIEDAMIVLRRDISASGKSVCRINGKLVTIAVLREVGSTLIDIHGQHEHQELMDESKHINLLDQFGADEILPAL
QEYQHVFRSFEQTQKKLKNLSENEQQMAHRLDLIQFQHDEILTADLKINEDEELSEEKRKLSNFEKIYESIQTSYTALQG
EQKGLDWVSLVMDNLQNAADLDPDYKNVADTVANSFYMLEDAARTIRNELDSLEYDPQRLNEIEDRLNEINQLKRKYGST
IEEILEYSSKIEEEIETLQNKEVHIGQMEKELASLKKDLRIEANNLTQTRRKYAKKLTKLIHKELKELYMEKTVFDLRID
SDTDHFHKSGADKVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
NVSTGSQVLCISHLPQVAAMADTHLYIAKVIKSGRTKTSVTPLSPSEKVKEIVRMISGVEVTDLTKQHAEELLRLAQNMK
AVT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=749500 FOF60_RS16790 WP_192470726.1 3268093..3269784(-) (recN) [Mesobacillus jeotgali strain SBJS01]
TTGTTAAATGAATTATCGATTCGAAACTTTGCCATTATTGAGTCATTATCCGTTTCTTTTAATAAAGGACTAACCGTACT
CACTGGAGAGACAGGTGCAGGAAAATCCATTATCATCGATGCCATCCACCTTCTAGTGGGTGGAAGAGGCTCGGCCGAAT
TCGTCCGCCATGGCGAAGATAAGGCTGAAATTGAAGGTTTGTTCCACCTTGAAGGAGAAAATCATCCAAGTTATGCAAAG
GCAGCTGAATTTGGCATTGAGATTGAAGATGCCATGATTGTCTTAAGAAGGGATATTTCCGCGAGTGGAAAAAGTGTTTG
CCGGATCAACGGCAAGCTCGTCACAATTGCTGTCTTGCGTGAAGTAGGCTCGACTTTGATCGATATTCATGGTCAGCATG
AGCACCAGGAATTGATGGATGAGTCTAAGCATATCAATCTTCTTGACCAATTCGGAGCAGATGAAATCCTTCCTGCCCTG
CAGGAATATCAGCACGTTTTCCGTTCATTTGAACAGACACAAAAAAAACTGAAGAACTTAAGTGAAAATGAACAGCAAAT
GGCCCACAGACTTGATTTGATTCAATTCCAGCATGATGAAATCCTTACAGCCGACCTGAAAATCAACGAGGATGAGGAGC
TTTCCGAAGAGAAGCGTAAACTTAGCAACTTCGAAAAAATTTATGAGAGTATTCAGACCAGTTATACTGCATTACAGGGT
GAGCAAAAGGGCCTGGATTGGGTCAGCTTGGTCATGGACAACCTTCAGAATGCAGCAGACTTGGATCCTGACTATAAAAA
TGTTGCTGACACAGTAGCGAACAGTTTTTATATGCTTGAAGATGCTGCAAGGACAATCAGGAATGAACTGGATTCTCTTG
AATATGACCCTCAGCGGTTGAATGAAATTGAAGACAGGCTGAACGAAATTAATCAGTTGAAACGGAAATACGGAAGTACG
ATAGAAGAAATCCTGGAGTACTCTTCAAAAATCGAGGAAGAAATCGAGACGCTTCAAAATAAGGAAGTACATATTGGCCA
GATGGAAAAGGAACTTGCATCACTTAAGAAAGATTTGCGCATCGAGGCCAATAACTTGACTCAAACTCGCAGAAAATATG
CTAAAAAACTTACGAAATTAATCCATAAAGAATTAAAAGAGCTGTATATGGAGAAGACAGTATTCGACCTGAGAATTGAC
TCCGATACAGACCATTTCCATAAAAGCGGCGCAGATAAAGTTGAATTTTATATCTCAACAAATCCGGGAGAACCTTTGAA
GCCTTTGTCAAAGATTGCTTCTGGCGGAGAACTTTCCCGGATCATGCTCGCGCTGAAAAGTATCTTCTCTAAACATCAGG
GTGTCACCTCCATCATTTTCGATGAAGTTGACACAGGAGTCAGCGGCCGCGTGGCTCAATCAATTGCGGAAAAAATCTAC
AATGTATCGACTGGATCACAGGTTCTTTGTATTTCTCATTTGCCTCAAGTTGCCGCGATGGCAGATACTCATCTGTATAT
CGCAAAGGTGATAAAGAGTGGAAGGACCAAAACATCCGTCACTCCGCTGTCTCCATCTGAGAAAGTAAAGGAGATCGTCA
GGATGATTTCCGGGGTTGAAGTTACAGATCTGACGAAACAGCATGCTGAAGAATTGCTGAGGCTTGCACAGAATATGAAG
GCTGTAACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.369

100

0.636