Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOF60_RS00530 Genome accession   NZ_CP109811
Coordinates   108145..109524 (+) Length   459 a.a.
NCBI ID   WP_192472800.1    Uniprot ID   -
Organism   Mesobacillus jeotgali strain SBJS01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103145..114524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOF60_RS00510 (FOF60_00510) - 103282..103743 (+) 462 WP_167834072.1 CtsR family transcriptional regulator -
  FOF60_RS00515 (FOF60_00515) - 103771..104319 (+) 549 WP_192472803.1 UvrB/UvrC motif-containing protein -
  FOF60_RS00520 (FOF60_00520) - 104322..105404 (+) 1083 WP_192472802.1 protein arginine kinase -
  FOF60_RS00525 (FOF60_00525) clpC 105409..107847 (+) 2439 WP_192472801.1 ATP-dependent protease ATP-binding subunit ClpC -
  FOF60_RS00530 (FOF60_00530) radA 108145..109524 (+) 1380 WP_192472800.1 DNA repair protein RadA Machinery gene
  FOF60_RS00535 (FOF60_00535) disA 109529..110602 (+) 1074 WP_192472799.1 DNA integrity scanning diadenylate cyclase DisA -
  FOF60_RS00540 (FOF60_00540) - 110864..111955 (+) 1092 WP_192472798.1 PIN/TRAM domain-containing protein -
  FOF60_RS00545 (FOF60_00545) ispD 112127..112822 (+) 696 WP_192472797.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FOF60_RS00550 (FOF60_00550) ispF 112865..113347 (+) 483 WP_192472796.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49687.02 Da        Isoelectric Point: 7.4336

>NTDB_id=749476 FOF60_RS00530 WP_192472800.1 108145..109524(+) (radA) [Mesobacillus jeotgali strain SBJS01]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNKMVEEVESTGSTRRGAFANTGNTSVAAKATPITSIETISEPRITTDLNE
LNRVLGGGVVRGSLVLIGGDPGIGKSTLLLQVSYQLAKKAHSVLYISGEESMRQTKLRADRLGVTSDNLLVYSETNLHEI
SLTIENSSPDFVIVDSIQTIFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEVGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVSLLMAVLEKRVGLLLANQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDKPTRASDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERIILPENNLGGWTPPRGVELIGVSSVSHALKVTLGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=749476 FOF60_RS00530 WP_192472800.1 108145..109524(+) (radA) [Mesobacillus jeotgali strain SBJS01]
ATGGCAAAAAGAAAAACAAAATTCATGTGCCAGGAATGTGGCTATGAATCTCCGAAATGGATGGGGAAATGTCCGGGATG
CGGGCAATGGAATAAGATGGTCGAGGAAGTGGAAAGCACTGGCTCGACAAGAAGAGGAGCTTTTGCCAATACAGGTAATA
CGAGTGTAGCTGCAAAGGCAACCCCAATTACCAGTATTGAAACAATCAGCGAGCCGCGGATTACGACAGATTTGAATGAG
TTGAACCGTGTTCTTGGCGGCGGGGTAGTCAGAGGGTCGCTTGTGCTGATAGGCGGGGATCCTGGTATCGGCAAATCGAC
GTTATTGCTTCAGGTATCTTACCAGCTGGCCAAGAAGGCGCATTCCGTCCTGTATATTTCAGGTGAGGAGTCGATGAGGC
AAACGAAGCTCCGCGCGGACCGGCTTGGTGTAACATCGGATAACCTGCTTGTTTATTCGGAAACCAACCTCCATGAAATC
AGCCTGACAATTGAAAACAGCAGTCCAGATTTTGTCATTGTTGACTCGATCCAAACTATTTTCCACCCTGAAGTGACCTC
CGCGCCAGGGAGTGTATCCCAGGTAAGGGAATGTACAGCTGAGTTAATGAGGATTGCAAAAACAAAGGGAATTGCGATTT
TTATTGTTGGCCATGTCACGAAGGAAGGCTCGATCGCCGGACCAAGATTGTTGGAGCATATGGTTGATACAGTTCTATAT
TTCGAAGGTGAGAGACACCACACTTACAGAATTCTTCGGGCTGTCAAAAACCGTTTCGGGTCTACGAATGAAATGGGTAT
TTTTGAGATGAAGGAAGTAGGTCTTGAAGAAGTGGCAAACCCATCGGAAATATTTTTAGAGGAAAGATCCCAGGGAGCTT
CGGGTTCAACGGTCGTGGCTTCGATGGAAGGAACGAGACCTGTACTGGTTGAAATCCAGGCGCTGATCTCGCCTACTAGC
TTTGGGAATCCAAGGCGCATGGCTACCGGAATCGACCATAACCGCGTTTCGCTTCTTATGGCGGTGCTTGAGAAACGTGT
CGGGTTGCTGCTCGCTAACCAGGATGCTTATTTGAAGGTCGCCGGCGGAGTGAAGCTGGATGAACCGGCAATCGACCTAG
CGGTGGCAGTCAGCATTGCCTCTAGCTTCAGGGATAAACCAACACGTGCTTCTGATTGTATCATTGGCGAGGTGGGGCTG
ACTGGGGAAGTCAGGAGGGTCTCGAGGATTGAACAGCGTGTCCAGGAAGCGGCGAAGCTTGGCTTTGAAAGAATTATTTT
ACCGGAGAATAACCTTGGCGGATGGACTCCTCCACGGGGAGTTGAGCTTATCGGGGTATCATCTGTCAGCCACGCATTAA
AAGTCACCTTGGGAGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.304

100

0.765
  radA Streptococcus mitis NCTC 12261

63.877

98.911

0.632
  radA Streptococcus mitis SK321

63.877

98.911

0.632
  radA Streptococcus pneumoniae Rx1

63.656

98.911

0.63
  radA Streptococcus pneumoniae D39

63.656

98.911

0.63
  radA Streptococcus pneumoniae R6

63.656

98.911

0.63
  radA Streptococcus pneumoniae TIGR4

63.656

98.911

0.63