Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QET41_RS17240 Genome accession   NZ_CP123231
Coordinates   3520964..3521569 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 5132     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3515964..3526569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QET41_RS17220 (QET41_17220) aes 3516118..3517086 (+) 969 WP_000801820.1 acetyl esterase -
  QET41_RS17225 (QET41_17225) hemH 3517061..3518023 (-) 963 WP_001250114.1 ferrochelatase -
  QET41_RS17230 (QET41_17230) adk 3518155..3518799 (-) 645 WP_001313630.1 adenylate kinase -
  QET41_RS17235 (QET41_17235) htpG 3518980..3520854 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  QET41_RS17240 (QET41_17240) recR 3520964..3521569 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QET41_RS17245 (QET41_17245) ybaB 3521569..3521898 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QET41_RS17250 (QET41_17250) dnaX 3521951..3523882 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QET41_RS17255 (QET41_17255) apt 3524011..3524562 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QET41_RS17260 (QET41_17260) ybaN 3524715..3525092 (-) 378 WP_001188900.1 DUF454 family protein -
  QET41_RS17265 (QET41_17265) priC 3525162..3525689 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  QET41_RS17270 (QET41_17270) rsmS 3525703..3525864 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QET41_RS17275 (QET41_17275) - 3525917..3526015 (-) 99 Protein_3390 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=749474 QET41_RS17240 WP_001195025.1 3520964..3521569(-) (recR) [Escherichia coli strain 5132]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=749474 QET41_RS17240 WP_001195025.1 3520964..3521569(-) (recR) [Escherichia coli strain 5132]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443