Detailed information NTG0749444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QET41_RS05605
• Genome accession: NZ_CP123231
• Coordinates: 1172561..1173553 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 5132
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1167561..1178553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QET41_RS05575 (QET41_05575)	ispD	1167622..1168332 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QET41_RS05580 (QET41_05580)	ispF	1168332..1168811 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QET41_RS05585 (QET41_05585)	truD	1168808..1169857 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
QET41_RS05590 (QET41_05590)	surE	1169838..1170599 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QET41_RS05595 (QET41_05595)	pcm	1170593..1171219 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QET41_RS05600 (QET41_05600)	nlpD	1171404..1172498 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QET41_RS05605 (QET41_05605)	rpoS	1172561..1173553 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QET41_RS05610 (QET41_05610)	-	1173731..1174282 (-)	552	WP_001179442.1	flavodoxin family protein	-
QET41_RS05615 (QET41_05615)	-	1174507..1175550 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
QET41_RS05620 (QET41_05620)	ygbN	1175693..1177057 (-)	1365	WP_000104433.1	GntP family transporter	-
QET41_RS05625 (QET41_05625)	ygbM	1177146..1177922 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=749444 QET41_RS05605 WP_000081550.1 1172561..1173553(+) (rpoS) [Escherichia coli strain 5132]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=749444 QET41_RS05605 WP_000081550.1 1172561..1173553(+) (rpoS) [Escherichia coli strain 5132]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715