Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QBL21_RS32180 Genome accession   NZ_CP123230
Coordinates   7558251..7560089 (-) Length   612 a.a.
NCBI ID   WP_407566641.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7553251..7565089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS32155 (QBL21_32145) - 7553688..7554506 (+) 819 WP_407565742.1 SAM-dependent methyltransferase -
  QBL21_RS32160 (QBL21_32150) - 7554549..7555565 (-) 1017 WP_407565743.1 LacI family DNA-binding transcriptional regulator -
  QBL21_RS32165 (QBL21_32155) - 7555639..7556376 (-) 738 WP_407565744.1 response regulator transcription factor -
  QBL21_RS32170 (QBL21_32160) - 7556572..7557582 (+) 1011 WP_407565745.1 alpha/beta hydrolase family protein -
  QBL21_RS32175 (QBL21_32165) - 7557570..7558159 (-) 590 Protein_6365 Uma2 family endonuclease -
  QBL21_RS32180 (QBL21_32170) rcrQ 7558251..7560089 (-) 1839 WP_407566641.1 ABC transporter ATP-binding protein Regulator
  QBL21_RS32185 (QBL21_32175) rcrP 7560335..7562080 (-) 1746 WP_407565746.1 ABC transporter ATP-binding protein Regulator
  QBL21_RS32190 (QBL21_32180) - 7562222..7562479 (+) 258 WP_407565747.1 MoaD/ThiS family protein -
  QBL21_RS32195 (QBL21_32185) - 7562487..7564301 (+) 1815 WP_407565748.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 65771.40 Da        Isoelectric Point: 5.0039

>NTDB_id=749412 QBL21_RS32180 WP_407566641.1 7558251..7560089(-) (rcrQ) [Streptomyces sp. 184]
MRMFSGPPVERSIDFRGSAVRLLRTLGPDRTLIRAILVLGAAGVALTVAGPKLLGHATDLVVAGVYGDRVDTGSARPTDG
IDFDAVGRTLLWAALVYVVAWGLGLAQARLTAVVVQRAVFRLREEVEAKLSRLPLSYFDRNQRGEILSRATNDIDNVGQS
LQQTMSQIVSSLLTIVGVLAVMFWISPLLALVALVTVPLSITVATRVGKRAQPQFVAQWASTGKLNAHIEEMYTGHSLVQ
VFGRRDEAAQTFREENDELFRAGYRAQFISGLIQPAMMCIGNLNYVLVAVVGGLRVASGALSIGDVQAFVQYSRQFSQPL
GQIASMANLVQSGVASAERVFELLDADEQEPDAESPARPAAPVRGEVAFEGVSFSYDPEKPLIEDLSLTVRPGQTVAIVG
PTGAGKTTLVNLLMRFYEVAGGRILLDGVNVADMSREGLRAQIGMVLQDTWLFGGTIAENIAYGAPAGTPMDRIVAAAKA
THVDRFVRTLPNGYDTVIDEEGTGVSAGEKQLVTIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAELRTGRTSFVIA
HRLSTIRDADVILVMESGSIVEQGTHEELLTAQGAYARLYQAQFAEPVAETI

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=749412 QBL21_RS32180 WP_407566641.1 7558251..7560089(-) (rcrQ) [Streptomyces sp. 184]
ATGCGCATGTTCAGCGGCCCGCCCGTCGAGCGCTCCATCGACTTCCGCGGCTCCGCCGTCCGCCTCCTGCGCACCCTGGG
CCCCGACCGCACCCTGATACGCGCCATCCTCGTCCTCGGCGCCGCCGGCGTCGCGCTCACCGTCGCCGGCCCGAAGCTCC
TCGGCCACGCCACCGACCTCGTCGTCGCCGGCGTGTACGGCGACCGGGTCGACACCGGCTCGGCCCGCCCCACCGACGGC
ATCGACTTCGACGCCGTCGGCCGGACGCTGCTGTGGGCGGCGCTCGTGTACGTCGTCGCGTGGGGCCTCGGCCTCGCACA
GGCGCGGCTGACGGCCGTGGTCGTGCAGCGGGCGGTCTTCCGGCTGCGCGAGGAGGTGGAGGCGAAGCTGTCGCGGCTGC
CGCTGTCGTACTTCGACCGCAACCAGCGCGGCGAGATCCTCTCCCGGGCGACCAACGACATCGACAACGTCGGGCAGTCG
CTCCAGCAGACCATGAGCCAGATCGTGTCGTCGCTGCTGACGATCGTCGGGGTGCTGGCGGTGATGTTCTGGATCTCGCC
GCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGATCACCGTGGCGACCCGGGTCGGCAAGCGGGCGCAGCCGC
AGTTCGTGGCGCAGTGGGCGTCCACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCACTCGCTGGTCCAG
GTCTTCGGCCGCCGCGACGAGGCGGCGCAGACCTTCCGGGAGGAGAACGACGAGCTGTTCCGGGCCGGGTACCGGGCGCA
GTTCATCTCCGGGCTGATCCAGCCGGCGATGATGTGCATCGGCAACCTCAACTACGTGCTGGTCGCCGTCGTCGGCGGCC
TGCGGGTCGCCTCCGGCGCGCTGTCGATCGGCGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCCGCTG
GGGCAGATCGCGTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTGCTGGACGCGGA
CGAGCAGGAGCCCGACGCCGAGTCGCCGGCCCGGCCGGCGGCGCCGGTGCGGGGGGAGGTGGCGTTCGAGGGCGTCTCGT
TCTCGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGACGGTGCGCCCGGGCCAGACGGTGGCGATCGTCGGG
CCCACGGGGGCGGGGAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGGCCGGCGGCCGGATCCTGCTCGA
CGGCGTGAACGTCGCGGACATGAGCCGCGAGGGGCTGCGGGCGCAGATCGGGATGGTCCTCCAGGACACGTGGCTCTTCG
GCGGCACGATCGCGGAGAACATCGCGTACGGGGCCCCGGCGGGCACGCCGATGGACAGGATCGTCGCCGCCGCGAAGGCC
ACCCACGTCGACCGCTTCGTACGCACCCTCCCGAACGGCTACGACACGGTGATCGACGAGGAGGGCACGGGCGTCTCGGC
GGGGGAGAAGCAGCTCGTCACCATCGCCCGGGCGTTCCTCGCGGAACCGGCGATCCTGGTCCTGGACGAGGCCACCAGCT
CGGTGGACACCCGCACGGAGGTCCTGATCCAGCACGCGATGGCGGAACTGCGCACGGGCCGCACGAGCTTCGTGATCGCC
CACCGCCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGTCGGGCAGCATCGTGGAACAGGGCACGCACGA
GGAACTGCTGACGGCACAGGGCGCGTACGCCCGCCTGTACCAGGCCCAGTTCGCGGAGCCGGTGGCAGAAACGATCTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(36-320)

ABC transporter (ABC_tran)

(384-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.617

92.157

0.402