Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QBL21_RS26645 Genome accession   NZ_CP123230
Coordinates   6256968..6258059 (-) Length   363 a.a.
NCBI ID   WP_407564765.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6251968..6263059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS26630 (QBL21_26620) - 6252646..6253929 (-) 1284 WP_407564762.1 extracellular solute-binding protein -
  QBL21_RS26635 (QBL21_26625) - 6254078..6255118 (+) 1041 WP_407564763.1 LacI family DNA-binding transcriptional regulator -
  QBL21_RS26640 (QBL21_26630) - 6255209..6256627 (-) 1419 WP_407564764.1 alpha-amylase -
  QBL21_RS26645 (QBL21_26635) rpoS 6256968..6258059 (-) 1092 WP_407564765.1 RNA polymerase sigma factor Regulator
  QBL21_RS26650 (QBL21_26640) - 6258413..6258694 (+) 282 WP_407564766.1 hypothetical protein -
  QBL21_RS26655 (QBL21_26645) dnaG 6258721..6260691 (-) 1971 WP_407564767.1 DNA primase -
  QBL21_RS26660 (QBL21_26650) - 6260743..6261318 (-) 576 WP_407564768.1 TetR/AcrR family transcriptional regulator -
  QBL21_RS26665 (QBL21_26655) - 6261545..6262615 (-) 1071 WP_407564769.1 phosphotransferase family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40429.38 Da        Isoelectric Point: 5.5859

>NTDB_id=749400 QBL21_RS26645 WP_407564765.1 6256968..6258059(-) (rpoS) [Streptomyces sp. 184]
MTTLEVAPVQTQTLNTSVRAGREGAPDVLTLPNGAPAGLDEPAGEPVPMPPPPAAVRPDRSGPSSDLFRQYLREIGRIPL
LTAAEEVELARRVEAGLFAEEKLAGEPELTQLALDLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVATHLGL
AEERVSEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLIDGR
PRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=749400 QBL21_RS26645 WP_407564765.1 6256968..6258059(-) (rpoS) [Streptomyces sp. 184]
GTGACCACCCTGGAGGTCGCCCCCGTGCAGACCCAGACCCTCAACACTTCCGTACGGGCCGGGCGCGAGGGCGCGCCGGA
CGTCCTGACCCTGCCGAACGGGGCTCCGGCGGGGCTCGACGAGCCCGCGGGCGAGCCGGTGCCCATGCCGCCGCCGCCCG
CCGCCGTGCGGCCGGACCGCAGCGGGCCCTCGTCCGACCTGTTCCGCCAGTACCTGCGCGAGATCGGCCGGATTCCGCTG
CTCACGGCCGCCGAGGAAGTGGAGCTGGCCCGCCGCGTCGAGGCCGGGCTGTTCGCCGAGGAGAAGCTGGCCGGGGAGCC
GGAGCTGACGCAGCTCGCGCTGGACCTGGACCGGCTCGTCGTGCTGGGCCGGATGGCCAAGCGCCGGCTGATCGAGGCCA
ACCTGCGTCTGGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGGCTGACGATGCTCGACCTCGTGCAGGAGGGCAAC
CTCGGCCTGATCCGCGCGGTGGAGAAGTTCGACTACGCCCGCGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATCCG
CCAGGCGATGTCCCGCGCGCTGGCCGACCAGGCCCGGACCATAAGGGTCCCGGTGCACGTCGTCGAGCTGATCAACCGGG
TCGTACGCGTCCAGCGCCGCATGCTCCAGGAGCGCGGCTACGAGCCGACGCCCGAAGAGGTCGCCACCCATCTCGGGCTC
GCCGAGGAGCGGGTGAGCGAGGTGCTGCGGCTGGCGCAGGAGCCGGTCTCGCTGCACGCGCCGGTCGGCGAGGAGGAGGA
CGTCGCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCGCCCGTGGAGTCGGCGGCGTTCCTGCTGCTGCGCGAGC
ACCTGGAGGCGGTGCTGTCCACGCTGGGCGAGCGGGAGCGCAAGGTCGTGCAGTTGCGGTACGGGCTGATCGACGGCCGG
CCGCGGACGCTGGAGGAGATAGGCCGCATCTTCGGCGTGACGCGCGAGCGGATCCGGCAGATCGAGTCCAAGACGCTCAA
CAAGCTGCGGGACCACGCCTTCGCGGACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(209-285)

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(66-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.71

80.716

0.361