Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QBL21_RS01655 Genome accession   NZ_CP123230
Coordinates   403476..404930 (-) Length   484 a.a.
NCBI ID   WP_407560163.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398476..409930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS01635 (QBL21_01625) - 398543..400384 (-) 1842 WP_407560158.1 sigma-70 family RNA polymerase sigma factor -
  QBL21_RS01640 (QBL21_01630) - 400458..401036 (-) 579 WP_407560160.1 phosphatase PAP2 family protein -
  QBL21_RS01645 (QBL21_01635) - 401165..402034 (+) 870 WP_407560161.1 hypothetical protein -
  QBL21_RS01650 (QBL21_01640) disA 402242..403366 (-) 1125 WP_407560162.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QBL21_RS01655 (QBL21_01645) radA 403476..404930 (-) 1455 WP_407560163.1 DNA repair protein RadA Machinery gene
  QBL21_RS01660 (QBL21_01650) ilvD 405091..406944 (+) 1854 WP_407560164.1 dihydroxy-acid dehydratase -
  QBL21_RS01665 (QBL21_01655) - 407101..407604 (+) 504 WP_407560165.1 hypothetical protein -
  QBL21_RS01670 (QBL21_01660) - 407670..408269 (-) 600 WP_407560166.1 TetR family transcriptional regulator -
  QBL21_RS01675 (QBL21_01665) - 408391..409605 (+) 1215 WP_407560167.1 MFS transporter -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50718.01 Da        Isoelectric Point: 7.6884

>NTDB_id=749343 QBL21_RS01655 WP_407560163.1 403476..404930(-) (radA) [Streptomyces sp. 184]
MATRKSGGRDRPAYRCSECGWSTVKWLGRCPECQAWGTVEEVGAPAVKTTAAGRVTTAALPIAQVDARHAEARTTGVPEL
DRVLGGGLVPGAVVLMAGEPGVGKSTLLLDVAAKAAVGTDRTLYVTGEESAGQVRLRADRIGALSDGLYLAAETDLASVL
AHLDEVKPALLVLDSVQTVASGEIDGAPGGMAQVREVAGALIRASKERGMATILVGHVTKDGAIAGPRLLEHLVDVVLHI
EGDRHARLRLVRGMKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGDIRALSKRDIYSATVGGVKLSEPAADLAVALALASAATDTPLPQNLVAIGEVGL
AGEVRRVTGVARRLAEAARLGFTQALVPADPGKVPSGMKVREVADIGDALRALPAGRRRAGGGPREPGGERERRESRQPE
EARR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=749343 QBL21_RS01655 WP_407560163.1 403476..404930(-) (radA) [Streptomyces sp. 184]
ATGGCAACCCGTAAGAGCGGCGGCAGGGACCGCCCCGCGTACCGCTGCTCCGAGTGCGGCTGGTCCACCGTGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGGTCGGCGCGCCCGCGGTCAAGACCACGGCCGCCGGCC
GGGTCACGACGGCCGCGCTGCCCATCGCGCAGGTCGACGCCCGCCACGCGGAGGCCCGCACCACCGGCGTGCCGGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCCGTGGTGCTGATGGCCGGCGAGCCCGGCGTGGGGAAGTCGACGCT
GCTGCTCGACGTGGCCGCGAAGGCCGCGGTCGGCACGGACCGCACGCTGTACGTGACGGGAGAGGAGTCCGCCGGCCAGG
TCCGGCTGCGCGCCGACCGCATCGGGGCGCTCAGCGACGGGCTGTACCTGGCCGCCGAGACCGACCTCGCGTCCGTCCTC
GCCCACCTCGACGAGGTCAAGCCCGCCCTGCTCGTGCTCGACTCCGTGCAGACCGTCGCCTCCGGCGAGATCGACGGCGC
CCCCGGCGGCATGGCACAGGTGCGGGAGGTGGCCGGCGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGATCC
TCGTGGGGCACGTGACGAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACATC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCATGAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCATCGGGCTGGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGGGACGAGCCCGTGCCCG
GCACCTGTCTGACGGTGACCCTGGAGGGCCGCCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGCGA
CATCCGCGCGCTGTCCAAGCGGGACATCTACAGCGCCACCGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CCGTCGCACTGGCTCTGGCCAGCGCCGCGACCGACACCCCGCTGCCGCAGAACCTGGTCGCGATCGGCGAAGTGGGCCTG
GCCGGAGAGGTGCGGCGGGTGACGGGGGTCGCCCGGCGGCTGGCGGAGGCGGCCCGGCTGGGCTTTACTCAGGCCCTCGT
GCCCGCGGACCCGGGCAAGGTCCCCTCAGGCATGAAAGTACGGGAAGTGGCGGACATAGGGGACGCGTTGCGCGCGCTGC
CCGCCGGTCGGCGGCGCGCGGGCGGAGGACCCCGTGAGCCGGGTGGGGAGAGGGAGCGAAGGGAGTCCCGGCAGCCCGAG
GAGGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(76-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.172

93.802

0.405
  radA Streptococcus pneumoniae D39

43.172

93.802

0.405
  radA Streptococcus pneumoniae R6

43.172

93.802

0.405
  radA Streptococcus pneumoniae Rx1

43.172

93.802

0.405
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

93.388

0.401
  radA Streptococcus mitis SK321

44.601

88.017

0.393
  radA Streptococcus mitis NCTC 12261

44.366

88.017

0.39