Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QBL21_RS00020 Genome accession   NZ_CP123230
Coordinates   5145..6278 (+) Length   377 a.a.
NCBI ID   WP_407559859.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 145..11278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS00010 (QBL21_00010) dnaN 2994..4133 (+) 1140 WP_407559857.1 DNA polymerase III subunit beta -
  QBL21_RS00015 (QBL21_00015) gnd 4188..5066 (+) 879 WP_407559858.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  QBL21_RS00020 (QBL21_00020) recF 5145..6278 (+) 1134 WP_407559859.1 DNA replication/repair protein RecF Machinery gene
  QBL21_RS00025 (QBL21_00025) - 6275..6889 (+) 615 WP_407559860.1 DUF721 domain-containing protein -
  QBL21_RS00030 (QBL21_00030) gyrB 7206..9311 (+) 2106 WP_407559861.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41050.75 Da        Isoelectric Point: 7.0833

>NTDB_id=749337 QBL21_RS00020 WP_407559859.1 5145..6278(+) (recF) [Streptomyces sp. 184]
MYVSHLSLADFRSYERAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSADAPLVRMGAARAVVRAAVTQDGRQ
QLVELELNPGKANRARLNRSSQVRPRDLLGVLRSVLFAPEDLALVKGDPDQRRRFLDELITARTPRLAGVRSDYDRVLKQ
RNTLLKTAAMARRHGGRQLDLSTLDVWDQHLARAGAELLAQRLELIAVLQPLVDKAYEQLAPGGGPAAFEYRSPAGGRFA
EARTREEFAGLLLEAMAEARKQEIERGVTLVGPHRDDLVLKLGELPAKGYASHGESWSYALALRLASYELLRGEGGGEPV
LVLDDVFAELDARRRERLAELVAPGEQVLVTAAVPEDVPGALAGARFTVADGRVERE

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=749337 QBL21_RS00020 WP_407559859.1 5145..6278(+) (recF) [Streptomyces sp. 184]
ATGTACGTCTCTCATCTCTCGCTGGCCGACTTCCGTTCGTATGAGCGGGCGGAGGTGCCCCTCGACCCGGGGGTGACGGC
CTTCGTCGGGCCGAACGGCCAGGGCAAGACGAATCTGGTCGAAGCGGTCGGCTATCTCGCGACGCTGGGCAGCCACCGGG
TGTCCGCGGACGCGCCGCTGGTGCGGATGGGTGCGGCGCGTGCGGTGGTACGGGCGGCGGTGACGCAGGACGGCCGGCAG
CAGCTCGTGGAGCTGGAGCTGAACCCGGGCAAGGCGAACCGGGCGCGGCTGAACCGGTCGTCGCAGGTCCGGCCGCGCGA
CCTGCTGGGTGTGCTGCGCTCCGTGCTCTTCGCGCCGGAGGACCTGGCGCTGGTCAAGGGCGATCCGGATCAGCGGCGCC
GGTTTCTCGACGAGCTGATCACGGCGCGGACGCCGCGGCTGGCGGGCGTGCGCAGCGACTACGACCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGACGGCCGCGATGGCGCGGCGGCACGGCGGCCGGCAACTGGATCTGTCGACGCTGGACGTGTG
GGACCAGCATCTGGCGCGTGCCGGGGCGGAGTTGCTCGCGCAGCGGCTGGAGCTGATCGCGGTCCTCCAGCCGCTGGTGG
ACAAGGCGTACGAGCAGTTGGCGCCCGGCGGCGGTCCGGCGGCGTTCGAGTACCGGTCACCGGCCGGCGGGCGGTTCGCG
GAGGCGCGTACGCGCGAGGAGTTCGCGGGGCTGCTGCTGGAGGCGATGGCGGAGGCGCGGAAGCAGGAGATCGAGCGGGG
TGTGACGCTGGTGGGTCCGCACCGCGACGATCTGGTGCTGAAGCTGGGCGAGTTGCCGGCGAAGGGCTACGCGTCGCACG
GGGAGTCGTGGTCGTACGCGCTGGCGCTGCGGCTCGCGTCGTACGAGCTGCTGCGCGGCGAGGGCGGCGGGGAGCCGGTG
CTGGTGCTGGACGACGTGTTCGCGGAGCTGGACGCGCGGCGGCGGGAGCGGCTGGCGGAGCTGGTGGCGCCCGGCGAGCA
GGTGCTGGTGACGGCGGCGGTGCCGGAGGACGTGCCGGGGGCGCTGGCGGGGGCGCGGTTCACGGTGGCCGACGGGCGGG
TGGAGCGGGAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.719

100

0.374