Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AZSP09_RS10920 Genome accession   NZ_AP021844
Coordinates   2340597..2341601 (+) Length   334 a.a.
NCBI ID   WP_130459496.1    Uniprot ID   -
Organism   Azospira sp. I09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335597..2346601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZSP09_RS10895 (AZSP09_21470) - 2336383..2336640 (-) 258 WP_152090046.1 YfhL family 4Fe-4S dicluster ferredoxin -
  AZSP09_RS10900 (AZSP09_21480) coaD 2336657..2337151 (-) 495 WP_130459921.1 pantetheine-phosphate adenylyltransferase -
  AZSP09_RS10905 (AZSP09_21490) rsmD 2337144..2337752 (-) 609 WP_232058787.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AZSP09_RS10910 (AZSP09_21500) - 2337752..2339047 (-) 1296 WP_232058788.1 pitrilysin family protein -
  AZSP09_RS10915 (AZSP09_21510) - 2339059..2340426 (-) 1368 WP_152090047.1 pitrilysin family protein -
  AZSP09_RS10920 (AZSP09_21520) pilA 2340597..2341601 (+) 1005 WP_130459496.1 signal recognition particle-docking protein FtsY Machinery gene
  AZSP09_RS10925 (AZSP09_21530) - 2341615..2342295 (+) 681 WP_130459497.1 ATP-binding cassette domain-containing protein -
  AZSP09_RS10930 (AZSP09_21540) ftsX 2342292..2343197 (+) 906 WP_014236126.1 permease-like cell division protein FtsX -
  AZSP09_RS10935 (AZSP09_21550) - 2343237..2344691 (-) 1455 WP_152090048.1 deoxyribodipyrimidine photo-lyase -
  AZSP09_RS10940 (AZSP09_21560) - 2344847..2346487 (+) 1641 WP_152090049.1 FapA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35652.20 Da        Isoelectric Point: 6.8846

>NTDB_id=74933 AZSP09_RS10920 WP_130459496.1 2340597..2341601(+) (pilA) [Azospira sp. I09]
MFGFLKKSDKDQDATPATAAAVAPVPEPLDKPLSWRERLFAGLSRTRSQLGGKLKSVFARGKVDDELLEELETLLLTSDV
GMDATMHLLDELKRRAKQDKLEGAAAIQQALADTLAQMLAPLEAPLQVDSHKPFVIMIAGVNGAGKTTSIGKLAKYFQGQ
GKSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQESGDPAAVVFDAIAAAKARGIDVVLADTAGRLPTQLHLMEEIAKVR
RVIQKADPTGPHEVMLVLDANIGQNALAQVKAFDKSINVTGLVLTKLDGTAKGGVIAAIARQCPKPVRFIGVGEGIDDLR
PFVARDFVDALFGE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=74933 AZSP09_RS10920 WP_130459496.1 2340597..2341601(+) (pilA) [Azospira sp. I09]
ATGTTTGGTTTCTTGAAAAAATCCGACAAAGACCAGGACGCCACGCCCGCCACCGCAGCCGCCGTGGCGCCGGTGCCGGA
GCCCCTGGACAAGCCGCTCTCCTGGCGCGAGCGCCTTTTCGCCGGCCTCTCCCGCACCCGCTCCCAGCTTGGCGGCAAGC
TCAAGTCCGTCTTTGCCCGAGGCAAGGTGGACGACGAACTGCTGGAAGAACTGGAGACCCTGTTGCTGACCAGCGACGTG
GGCATGGACGCCACCATGCACCTGCTCGACGAACTGAAGCGCCGCGCCAAGCAGGACAAGCTGGAAGGCGCCGCCGCCAT
CCAGCAGGCCCTGGCCGACACCCTGGCCCAGATGCTGGCGCCCCTGGAAGCGCCCCTGCAGGTGGATAGCCACAAGCCCT
TCGTCATCATGATTGCCGGGGTCAACGGCGCCGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTACTTCCAGGGCCAG
GGCAAGAGCGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCTGCCCGGGAACAGCTGATGACCTGGGGCGAGCGCAA
CAACGTCACGGTCATCGCCCAGGAATCCGGCGACCCGGCGGCCGTGGTCTTCGATGCCATCGCCGCCGCCAAGGCCCGGG
GCATCGACGTGGTGCTGGCTGACACCGCCGGCCGCCTGCCCACCCAGCTGCACCTCATGGAAGAGATCGCCAAGGTGCGC
CGGGTGATCCAGAAGGCCGACCCCACCGGCCCCCACGAGGTGATGCTGGTGCTGGATGCCAACATCGGCCAGAACGCCCT
GGCCCAGGTGAAGGCCTTCGACAAGTCCATCAACGTCACCGGCCTGGTGCTGACCAAGCTGGACGGCACCGCCAAGGGCG
GCGTCATCGCCGCCATCGCCCGCCAGTGTCCCAAGCCGGTGCGCTTCATCGGCGTCGGCGAAGGCATCGACGACCTGCGC
CCCTTCGTCGCCCGGGACTTCGTGGACGCCCTCTTCGGCGAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(50-115)

SRP54-type protein, GTPase domain (SRP54)

(133-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.158

91.018

0.575

Multiple sequence alignment