Detailed information NTG0749264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PAE60_RS03960
• Genome accession: NZ_CP123197
• Coordinates: 571411..572403 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C-SRM-3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 566411..577403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAE60_RS03930 (PAE60_003930)	ispD	566472..567182 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PAE60_RS03935 (PAE60_003935)	ispF	567182..567661 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PAE60_RS03940 (PAE60_003940)	truD	567658..568707 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
PAE60_RS03945 (PAE60_003945)	surE	568688..569449 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
PAE60_RS03950 (PAE60_003950)	pcm	569443..570069 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PAE60_RS03955 (PAE60_003955)	nlpD	570254..571348 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
PAE60_RS03960 (PAE60_003960)	rpoS	571411..572403 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PAE60_RS03965 (PAE60_003965)	ygbN	572497..573861 (-)	1365	WP_000104456.1	GntP family transporter	-
PAE60_RS03970 (PAE60_003970)	ygbM	573950..574726 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
PAE60_RS03975 (PAE60_003975)	ygbL	574731..575369 (-)	639	WP_001278994.1	aldolase	-
PAE60_RS03980 (PAE60_003980)	otnK	575366..576628 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=749264 PAE60_RS03960 WP_000081550.1 571411..572403(+) (rpoS) [Escherichia coli strain C-SRM-3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=749264 PAE60_RS03960 WP_000081550.1 571411..572403(+) (rpoS) [Escherichia coli strain C-SRM-3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715