Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   L0P93_RS15355 Genome accession   NZ_CP109795
Coordinates   3002483..3003235 (-) Length   250 a.a.
NCBI ID   WP_277160934.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2997483..3008235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS15325 (L0P93_15330) - 2997829..2998263 (+) 435 WP_045510139.1 helix-turn-helix transcriptional regulator -
  L0P93_RS15330 (L0P93_15335) - 2998277..2998723 (+) 447 WP_015968241.1 ImmA/IrrE family metallo-endopeptidase -
  L0P93_RS15335 (L0P93_15340) - 2998769..3000193 (+) 1425 WP_104679010.1 recombinase family protein -
  L0P93_RS15340 (L0P93_15345) - 3000206..3000613 (-) 408 Protein_2969 UPF0758 domain-containing protein -
  L0P93_RS15345 (L0P93_15350) - 3000645..3001214 (-) 570 WP_012118105.1 Maf family protein -
  L0P93_RS15350 (L0P93_15355) - 3001355..3002356 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  L0P93_RS15355 (L0P93_15360) comC 3002483..3003235 (-) 753 WP_277160934.1 A24 family peptidase Machinery gene
  L0P93_RS15360 (L0P93_15365) - 3003375..3004667 (-) 1293 WP_029973369.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  L0P93_RS15365 (L0P93_15370) - 3004726..3007368 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  L0P93_RS15370 (L0P93_15375) - 3007821..3008012 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27316.05 Da        Isoelectric Point: 9.5936

>NTDB_id=749260 L0P93_RS15355 WP_277160934.1 3002483..3003235(-) (comC) [Bacillus velezensis strain B19]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTTAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAATRGRLGKKRPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=749260 L0P93_RS15355 WP_277160934.1 3002483..3003235(-) (comC) [Bacillus velezensis strain B19]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGACAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCGACCCGGGGCAGGCTTGGTA
AAAAGCGACCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572