Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   L0P93_RS13685 Genome accession   NZ_CP109795
Coordinates   2707656..2708456 (-) Length   266 a.a.
NCBI ID   WP_265605823.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2702656..2713456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS13655 (L0P93_13655) - 2703208..2703840 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  L0P93_RS13660 (L0P93_13660) - 2704131..2704268 (+) 138 WP_014470646.1 hypothetical protein -
  L0P93_RS13665 (L0P93_13665) - 2704362..2705480 (+) 1119 WP_029973892.1 NADH-dependent flavin oxidoreductase -
  L0P93_RS13670 (L0P93_13670) - 2705606..2705818 (+) 213 WP_029973891.1 spore germination protein -
  L0P93_RS13675 (L0P93_13675) - 2705940..2706152 (+) 213 WP_014418351.1 spore germination protein -
  L0P93_RS13680 (L0P93_13680) alr 2706327..2707508 (+) 1182 WP_277160772.1 alanine racemase -
  L0P93_RS13685 (L0P93_13685) spo0A 2707656..2708456 (-) 801 WP_265605823.1 sporulation transcription factor Spo0A Regulator
  L0P93_RS13690 (L0P93_13690) spoIVB 2708737..2710017 (-) 1281 WP_029973889.1 SpoIVB peptidase -
  L0P93_RS13695 (L0P93_13695) recN 2710181..2711911 (-) 1731 WP_277160773.1 DNA repair protein RecN Machinery gene
  L0P93_RS13700 (L0P93_13700) argR 2711943..2712392 (-) 450 WP_003153173.1 transcriptional regulator ArgR -
  L0P93_RS13705 (L0P93_13705) - 2712489..2713334 (-) 846 WP_029973888.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29628.09 Da        Isoelectric Point: 5.9132

>NTDB_id=749243 L0P93_RS13685 WP_265605823.1 2707656..2708456(-) (spo0A) [Bacillus velezensis strain B19]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSGIIRDQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=749243 L0P93_RS13685 WP_265605823.1 2707656..2708456(-) (spo0A) [Bacillus velezensis strain B19]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCTGATGTACTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGATGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCGGCATTATCCGCGACCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951