Detailed information NTG0074924

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: AZSP09_RS03940
• Genome accession: NZ_AP021844
• Coordinates: 852684..854057 (-)
• Length: 457 a.a.
• NCBI ID: WP_130458463.1
• Uniprot ID: -
• Organism: Azospira sp. I09
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 847684..859057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AZSP09_RS03925 (AZSP09_07700)	-	848019..849032 (-)	1014	WP_152089232.1	IS110 family transposase	-
AZSP09_RS03930 (AZSP09_07710)	-	849306..851807 (-)	2502	WP_152089233.1	FtsX-like permease family protein	-
AZSP09_RS03935 (AZSP09_07720)	-	851976..852581 (+)	606	WP_152089234.1	DUF5610 domain-containing protein	-
AZSP09_RS03940 (AZSP09_07730)	radA	852684..854057 (-)	1374	WP_130458463.1	DNA repair protein RadA	Machinery gene
AZSP09_RS03945 (AZSP09_07740)	-	854091..856715 (-)	2625	WP_152089235.1	PAS domain S-box protein	-
AZSP09_RS03950 (AZSP09_07750)	alr	856955..858046 (-)	1092	WP_152089236.1	alanine racemase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 48646.09 Da
• Isoelectric Point: 7.6672

>NTDB_id=74924 AZSP09_RS03940 WP_130458463.1 852684..854057(-) (radA) [Azospira sp. I09]
MAKTKSIYTCTECGAQSPKWQGQCSACNAWNTLVETVAEAGGKGSGHRFESLAPGTPKLQALSEIETREAARLPTGLSEF
DRALGGGLVAGGVVLIGGDPGIGKSTLLLQALAALAPQHKVLYVSGEESGQQVALRARRLQLDVERLPLLAEINLERILG
VVQTEKPQVAVIDSIQTLWSDQLTSAPGSVAQVRECAAQLTRLAKQTGVTVILVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAVKNRYGAVNELGVFGMTDKGLKGVSNPSALFLSQHGQEVAGSCVLVTQEGTRPLLVEIQALVDTTMGG
SPRRLSVGLEQNRLAMLLAVLHRHAGIGCFDQDVFVNAVGGVKISEPAADLPVLLAIISSLKNRPLPEKLVVFGEVGLAG
EIRPAPRGQERLKEAAKLGFTRALVPEANKPRQPIPGLEVVAVSRIEQAVERLRDWE

Nucleotide

• Length: 1374 bp

>NTDB_id=74924 AZSP09_RS03940 WP_130458463.1 852684..854057(-) (radA) [Azospira sp. I09]
ATGGCGAAGACGAAAAGCATCTATACCTGCACCGAATGCGGTGCCCAGTCCCCCAAATGGCAGGGCCAGTGTTCCGCCTG
CAATGCCTGGAATACCCTGGTGGAAACCGTGGCCGAGGCCGGCGGCAAGGGCAGCGGCCACCGTTTCGAATCCCTGGCCC
CCGGCACGCCCAAGCTGCAGGCCCTCTCCGAGATCGAGACCCGGGAGGCGGCGCGCCTGCCCACGGGCCTGTCCGAATTC
GACCGGGCCCTGGGCGGCGGCCTGGTGGCCGGTGGCGTGGTGCTCATCGGCGGCGACCCGGGTATCGGCAAGAGCACCCT
GCTGCTGCAGGCCCTGGCCGCCCTGGCGCCCCAGCACAAGGTGCTCTACGTCAGCGGCGAAGAGTCGGGGCAGCAGGTGG
CCCTGCGGGCCCGGCGCCTGCAGTTGGACGTGGAGCGCCTGCCCTTGCTGGCGGAAATCAACCTGGAACGCATCCTCGGC
GTGGTGCAGACGGAAAAGCCCCAGGTGGCGGTGATCGACTCCATCCAGACCCTGTGGTCCGACCAGCTCACCTCGGCTCC
CGGCTCCGTGGCCCAGGTGCGCGAATGCGCCGCCCAGCTGACCCGGCTGGCCAAGCAGACCGGCGTCACCGTGATCCTGG
TGGGCCACGTGACCAAGGAAGGGGCCCTGGCCGGGCCCCGGGTGCTGGAACACATCGTGGACACGGTGCTGTACTTCGAG
GGCGACACCCATTCCTCCTTCCGCCTCATCCGGGCGGTGAAGAACCGCTACGGCGCGGTCAATGAACTGGGCGTCTTCGG
CATGACCGACAAGGGGCTCAAGGGCGTCTCCAACCCTTCGGCCCTGTTCCTTTCCCAGCACGGGCAGGAGGTGGCCGGCT
CCTGCGTCCTGGTGACCCAGGAAGGCACCCGGCCCCTACTGGTGGAAATCCAGGCCCTGGTGGATACCACCATGGGCGGC
AGCCCGCGGCGCCTTTCCGTCGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGCCGGCAT
CGGCTGTTTCGACCAGGACGTCTTCGTCAATGCGGTGGGCGGGGTCAAGATCAGCGAACCGGCGGCGGATCTGCCGGTGC
TGCTGGCCATCATTTCCTCCCTGAAGAACCGGCCCCTGCCGGAAAAACTGGTGGTCTTCGGCGAAGTGGGCCTGGCCGGC
GAGATCCGCCCGGCGCCCCGGGGCCAGGAACGGCTCAAGGAAGCGGCCAAGCTGGGCTTCACCCGGGCTCTGGTTCCCGA
GGCCAACAAGCCGCGCCAGCCCATTCCCGGGCTGGAAGTGGTGGCGGTGAGCCGCATCGAACAGGCGGTGGAGCGGCTGC
GGGACTGGGAGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (69-221)

• Subunit ChlI of Mg-chelatase (ChlI) (349-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.684	99.781	0.486
radA	Streptococcus mitis SK321	47.368	99.781	0.473
radA	Streptococcus pneumoniae D39	47.033	99.562	0.468
radA	Streptococcus pneumoniae TIGR4	47.033	99.562	0.468
radA	Streptococcus mitis NCTC 12261	47.033	99.562	0.468
radA	Streptococcus pneumoniae R6	47.033	99.562	0.468
radA	Streptococcus pneumoniae Rx1	47.033	99.562	0.468