Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   L0P93_RS08405 Genome accession   NZ_CP109795
Coordinates   1596526..1597662 (-) Length   378 a.a.
NCBI ID   WP_277161297.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1585266..1633569 1596526..1597662 within 0


Gene organization within MGE regions


Location: 1585266..1633569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS08320 (L0P93_08330) - 1585266..1586594 (+) 1329 WP_029973702.1 PhoH family protein -
  L0P93_RS08325 (L0P93_08335) - 1586589..1587064 (-) 476 Protein_1577 peptidyl-prolyl cis-trans isomerase -
  L0P93_RS08330 (L0P93_08340) - 1587167..1587453 (+) 287 Protein_1578 glutaminase -
  L0P93_RS08335 (L0P93_08345) - 1588034..1588276 (-) 243 WP_253599912.1 hypothetical protein -
  L0P93_RS08340 (L0P93_08350) - 1588386..1589048 (+) 663 WP_071347040.1 hypothetical protein -
  L0P93_RS08345 (L0P93_08360) - 1590431..1590775 (-) 345 WP_208557842.1 hypothetical protein -
  L0P93_RS08350 (L0P93_08365) - 1590806..1590961 (-) 156 WP_165913834.1 hypothetical protein -
  L0P93_RS08355 (L0P93_08370) - 1590951..1591352 (-) 402 WP_277161293.1 hypothetical protein -
  L0P93_RS08360 (L0P93_08375) - 1591464..1591865 (-) 402 WP_174747601.1 hypothetical protein -
  L0P93_RS08365 (L0P93_08380) - 1592008..1592241 (+) 234 WP_174747600.1 helix-turn-helix transcriptional regulator -
  L0P93_RS08370 (L0P93_08385) - 1592323..1592604 (+) 282 WP_014417668.1 hypothetical protein -
  L0P93_RS08375 (L0P93_08390) - 1592657..1592902 (-) 246 WP_105322064.1 helix-turn-helix domain-containing protein -
  L0P93_RS08380 (L0P93_08395) - 1593413..1594123 (+) 711 WP_234933144.1 hypothetical protein -
  L0P93_RS08385 (L0P93_08400) - 1594159..1594467 (-) 309 WP_277161294.1 hypothetical protein -
  L0P93_RS08390 (L0P93_08405) - 1594480..1595904 (-) 1425 WP_277161295.1 lipase -
  L0P93_RS08395 (L0P93_08410) - 1595954..1596319 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  L0P93_RS08400 (L0P93_08415) - 1596363..1596536 (-) 174 WP_277161296.1 aspartate phosphatase -
  L0P93_RS08405 (L0P93_08420) rapC 1596526..1597662 (-) 1137 WP_277161297.1 aspartate phosphatase Regulator
  L0P93_RS08410 (L0P93_08425) - 1597844..1598674 (-) 831 WP_277161298.1 SHOCT domain-containing protein -
  L0P93_RS08415 (L0P93_08430) - 1598871..1599446 (+) 576 WP_277161299.1 DUF6037 family protein -
  L0P93_RS08420 (L0P93_08435) - 1599735..1600433 (-) 699 WP_127010393.1 hypothetical protein -
  L0P93_RS08425 (L0P93_08440) - 1600553..1603192 (-) 2640 WP_277161300.1 phage tail protein -
  L0P93_RS08430 (L0P93_08445) - 1603207..1603962 (-) 756 WP_277161301.1 phage tail domain-containing protein -
  L0P93_RS08435 (L0P93_08450) - 1604013..1610850 (-) 6838 Protein_1599 phage tail tape measure protein -
  L0P93_RS08440 (L0P93_08455) - 1611595..1612728 (-) 1134 WP_263908400.1 GIY-YIG nuclease family protein -
  L0P93_RS08445 (L0P93_08460) - 1612903..1613781 (+) 879 WP_277161302.1 tyrosine-type recombinase/integrase -
  L0P93_RS08450 (L0P93_08465) - 1613907..1614116 (+) 210 WP_072589059.1 hypothetical protein -
  L0P93_RS08455 (L0P93_08470) - 1614162..1614446 (+) 285 WP_277161303.1 hypothetical protein -
  L0P93_RS08460 (L0P93_08475) - 1614545..1614754 (+) 210 WP_072589061.1 hypothetical protein -
  L0P93_RS08465 (L0P93_08480) - 1614751..1615047 (-) 297 WP_072589062.1 hypothetical protein -
  L0P93_RS08470 (L0P93_08485) - 1615097..1615264 (-) 168 WP_014417681.1 hypothetical protein -
  L0P93_RS08475 (L0P93_08490) - 1615538..1616206 (+) 669 WP_277161304.1 hypothetical protein -
  L0P93_RS08480 (L0P93_08495) - 1616218..1616706 (-) 489 WP_277161305.1 hypothetical protein -
  L0P93_RS08485 (L0P93_08500) - 1616703..1616861 (-) 159 WP_161619860.1 XkdX family protein -
  L0P93_RS08490 (L0P93_08505) - 1616862..1617131 (-) 270 WP_277161306.1 hypothetical protein -
  L0P93_RS08495 (L0P93_08510) - 1617146..1618453 (-) 1308 WP_277161307.1 hypothetical protein -
  L0P93_RS08500 (L0P93_08515) - 1618492..1619061 (-) 570 WP_277161308.1 HNH endonuclease -
  L0P93_RS08505 (L0P93_08520) - 1619072..1619266 (-) 195 WP_057079931.1 hypothetical protein -
  L0P93_RS08510 (L0P93_08525) - 1619671..1622517 (-) 2847 WP_277161309.1 hypothetical protein -
  L0P93_RS08515 (L0P93_08530) - 1622535..1624439 (-) 1905 WP_277161310.1 hypothetical protein -
  L0P93_RS08520 (L0P93_08535) - 1624813..1625844 (+) 1032 WP_277161311.1 AimR family lysis-lysogeny pheromone receptor -
  L0P93_RS08525 (L0P93_08540) - 1625873..1626004 (+) 132 WP_266023022.1 hypothetical protein -
  L0P93_RS08530 (L0P93_08545) - 1626129..1626377 (+) 249 WP_208557827.1 hypothetical protein -
  L0P93_RS08535 (L0P93_08550) - 1626491..1627372 (+) 882 WP_208557826.1 hypothetical protein -
  L0P93_RS08540 (L0P93_08555) - 1627387..1627905 (+) 519 WP_234933140.1 hypothetical protein -
  L0P93_RS08545 (L0P93_08560) - 1627922..1628179 (+) 258 WP_057079936.1 hypothetical protein -
  L0P93_RS08550 (L0P93_08565) - 1628228..1628407 (+) 180 WP_057079937.1 hypothetical protein -
  L0P93_RS08555 (L0P93_08570) - 1628496..1629032 (+) 537 WP_208557825.1 hypothetical protein -
  L0P93_RS08560 (L0P93_08575) - 1629029..1629451 (+) 423 WP_277161312.1 hypothetical protein -
  L0P93_RS08565 (L0P93_08580) - 1629514..1629831 (+) 318 WP_208557823.1 hypothetical protein -
  L0P93_RS08570 (L0P93_08585) - 1629891..1630478 (+) 588 WP_208557822.1 hypothetical protein -
  L0P93_RS08575 (L0P93_08590) - 1630533..1631495 (+) 963 WP_208557821.1 hypothetical protein -
  L0P93_RS08580 (L0P93_08595) - 1631860..1633569 (+) 1710 WP_106503064.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44627.90 Da        Isoelectric Point: 4.7721

>NTDB_id=749237 L0P93_RS08405 WP_277161297.1 1596526..1597662(-) (rapC) [Bacillus velezensis strain B19]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAAYEHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILAYLEFKTMFSDLEDLATDAAKYYTTNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=749237 L0P93_RS08405 WP_277161297.1 1596526..1597662(-) (rapC) [Bacillus velezensis strain B19]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTATATAATTTAGGGATCTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTGTTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGACGGAACAGCTGCTTATGAACATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTGAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTGCTTATTTAGAATTTAAAACAATGTTTTCAGATTTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AACAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.407

100

0.458