Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   L0P93_RS07985 Genome accession   NZ_CP109795
Coordinates   1482531..1483124 (+) Length   197 a.a.
NCBI ID   WP_277161273.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477531..1488124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS07955 (L0P93_07965) - 1477745..1478200 (+) 456 WP_007409622.1 flavodoxin -
  L0P93_RS07960 (L0P93_07970) dapD 1478282..1478992 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  L0P93_RS07965 (L0P93_07975) - 1479063..1480187 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  L0P93_RS07970 (L0P93_07980) - 1480248..1480493 (+) 246 WP_003154596.1 YkuS family protein -
  L0P93_RS07975 (L0P93_07985) - 1480527..1481333 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  L0P93_RS07980 (L0P93_07990) - 1481621..1482079 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  L0P93_RS07985 (L0P93_07995) rok 1482531..1483124 (+) 594 WP_277161273.1 transcriptional regulator Rok Regulator
  L0P93_RS07990 (L0P93_08000) - 1483145..1484137 (-) 993 WP_021493753.1 hypothetical protein -
  L0P93_RS07995 (L0P93_08005) - 1484283..1484885 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  L0P93_RS08000 (L0P93_08010) - 1484937..1485956 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  L0P93_RS08005 (L0P93_08015) glp 1485974..1487266 (+) 1293 WP_022553413.1 gephyrin-like molybdotransferase Glp -
  L0P93_RS08010 (L0P93_08020) mobB 1487227..1487748 (+) 522 WP_277161275.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22615.76 Da        Isoelectric Point: 10.0959

>NTDB_id=749235 L0P93_RS07985 WP_277161273.1 1482531..1483124(+) (rok) [Bacillus velezensis strain B19]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKVTLSRCLQSLRQEMRSYQKPQT
QPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=749235 L0P93_RS07985 WP_277161273.1 1482531..1483124(+) (rok) [Bacillus velezensis strain B19]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGACAGGAAATGAGAAGCTATCAAAAGCCGCAGACA
CAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAGAAG
AAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATGCAG
CGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGAAAC
AGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.443

98.477

0.802