Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L0P93_RS06580 Genome accession   NZ_CP109795
Coordinates   1229453..1231279 (+) Length   608 a.a.
NCBI ID   WP_277161386.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224453..1236279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS06555 (L0P93_06565) - 1225116..1225694 (+) 579 WP_007409110.1 GNAT family N-acetyltransferase -
  L0P93_RS06560 (L0P93_06570) spx 1225873..1226268 (+) 396 WP_003155034.1 transcriptional regulator Spx -
  L0P93_RS06565 (L0P93_06575) - 1226326..1226982 (-) 657 WP_014417421.1 TerC family protein -
  L0P93_RS06570 (L0P93_06580) mecA 1227258..1227914 (+) 657 WP_003155032.1 adaptor protein MecA Regulator
  L0P93_RS06575 (L0P93_06585) - 1228065..1229225 (+) 1161 WP_029973144.1 competence protein CoiA family protein -
  L0P93_RS06580 (L0P93_06590) pepF 1229453..1231279 (+) 1827 WP_277161386.1 oligoendopeptidase F Regulator
  L0P93_RS06585 (L0P93_06595) - 1231317..1231484 (-) 168 WP_003155026.1 hypothetical protein -
  L0P93_RS06590 (L0P93_06600) spxH 1231771..1232673 (-) 903 WP_003155024.1 protease adaptor protein SpxH -
  L0P93_RS06595 (L0P93_06605) - 1232670..1233068 (-) 399 WP_003155023.1 thiol management oxidoreductase -
  L0P93_RS06600 (L0P93_06610) - 1233297..1233983 (-) 687 WP_277161233.1 lytic transglycosylase domain-containing protein -
  L0P93_RS06605 (L0P93_06615) - 1233988..1234560 (-) 573 WP_029973141.1 CYTH domain-containing protein -
  L0P93_RS06610 (L0P93_06620) - 1234685..1235050 (+) 366 WP_012117290.1 hypothetical protein -
  L0P93_RS06615 (L0P93_06625) yjbM 1235078..1235713 (+) 636 WP_003155019.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 69659.24 Da        Isoelectric Point: 5.2024

>NTDB_id=749232 L0P93_RS06580 WP_277161386.1 1229453..1231279(+) (pepF) [Bacillus velezensis strain B19]
MTEENKATAPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTNRLGKLYA
YAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSEQE
EALLAEASEALSSPSNTFSVLNNADITFPSIKDENGKETQITHGNFINFLESSNREVRKNAFEAVYKTYGQYKNTMATTL
SGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGMK
VTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHSV
HSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQE
GEPLTPELLNELYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFLK
AGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=749232 L0P93_RS06580 WP_277161386.1 1229453..1231279(+) (pepF) [Bacillus velezensis strain B19]
ATGACTGAGGAAAATAAAGCGACAGCGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATATTTT
TCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATCCCGAATTTATCTTCTTTTAAAGGAACGC
TTGCTCATTCGGCTGACAATTTATACGCGGCGCTTACGGCACAGGATGAAGTGACGAACCGCCTTGGCAAACTTTATGCA
TACGCGCATATGCGCTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGCCTGTATTC
CCAGGCTGCCAGCGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCACCAGTTCATTCTGG
AAAAAGAAGAGCTTAAGCTTTACTCCCATGCAATTGAAGAAATTACAAAACAGCGCCCGCACGTGCTGAGCGAACAAGAA
GAGGCCCTGCTTGCGGAAGCCTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGCGTTTTAAATAACGCCGATATTAC
ATTTCCGTCGATTAAAGATGAAAACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCAGCA
ATCGTGAAGTCCGCAAAAACGCATTTGAAGCTGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACACTC
AGCGGCACTGTGAAAAAAGATAATTTTTACGCCCGTGTGAAAAAATATAAATCAGCACGGGAAGCGGCTTTATCCAATAA
CAGCATCCCTGAAGAAGTTTACGATAACCTGATTAAAACGATAAATAAACATCTTCCGTTATTACACCGTTACATTGACC
TGCGGAAAAAGGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTCGTAAAAGATTCGGGAATGAAG
GTCACATATGAGGAAGCGAAAGATTATATGCTCAAAGGACTTGCTCCGCTGGGCGAGGAATACGCGTCTATTTTAAAAGA
AGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACGGCA
CGAATCCGTACATCTTGATGAACTGGCATGATAATGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCCGTG
CACAGCTACTATACGAGAAAATATCAGCCGTATCCGTACGGTAACTACAGCATTTTTGTCGCTGAAGTCGCTTCAACGAC
TAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAGGATGAAAAACAGCGTCTGTACCTGCTCAACCACATGC
TTGAAGGATTCAGAGGCACAGTGTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAGGAA
GGCGAGCCGCTGACGCCTGAACTGCTGAACGAACTTTATTATGATCTGAATAAAAAGTATTTCGGTGACAACATGGTGAT
TGATAAAGAAATCAGTCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAGGCT
ACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTGGAGCGCTATACCGAATTCTTAAAA
GCGGGAAGCTCGGAATATCCGATCGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGCGGC
CTGCAAAATGTTTGAAGAGAAGCTGAACGAAATGGAAGAGCTTCTTTCGAAAGTGAACCCTTCGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

98.026

0.488