Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   L0P93_RS02145 Genome accession   NZ_CP109795
Coordinates   381432..381869 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 376432..386869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS02120 (L0P93_02120) - 377452..378588 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  L0P93_RS02125 (L0P93_02125) - 378603..379037 (+) 435 WP_014416871.1 RDD family protein -
  L0P93_RS02130 (L0P93_02130) - 379109..379432 (+) 324 WP_277161131.1 YckD family protein -
  L0P93_RS02135 (L0P93_02135) - 379536..380972 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  L0P93_RS02140 (L0P93_02140) nin/comJ 381013..381411 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  L0P93_RS02145 (L0P93_02145) nucA/comI 381432..381869 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  L0P93_RS02150 (L0P93_02150) hxlB 382200..382757 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  L0P93_RS02155 (L0P93_02155) hxlA 382754..383389 (-) 636 WP_277161132.1 3-hexulose-6-phosphate synthase -
  L0P93_RS02160 (L0P93_02160) - 383621..383983 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=749214 L0P93_RS02145 WP_003156588.1 381432..381869(-) (nucA/comI) [Bacillus velezensis strain B19]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=749214 L0P93_RS02145 WP_003156588.1 381432..381869(-) (nucA/comI) [Bacillus velezensis strain B19]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641