Detailed information NTG0749167

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M4Z05_RS21680
• Genome accession: NZ_CP109772
• Coordinates: 4338490..4339290 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain YZ-58
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4333490..4344290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4Z05_RS21645 (M4Z05_21650)	gspH	4333646..4334161 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
M4Z05_RS21650 (M4Z05_21655)	gspI	4334158..4334523 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
M4Z05_RS21655 (M4Z05_21660)	gspJ	4334520..4335116 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
M4Z05_RS21660 (M4Z05_21665)	gspK	4335113..4336099 (+)	987	WP_077266202.1	type II secretion system minor pseudopilin GspK	-
M4Z05_RS21665 (M4Z05_21670)	gspL	4336086..4337279 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
M4Z05_RS21670 (M4Z05_21675)	-	4337272..4337757 (+)	486	WP_004151943.1	type II secretion system protein M	-
M4Z05_RS21675 (M4Z05_21680)	-	4337747..4338493 (+)	747	WP_004178605.1	type II secretion system protein N	-
M4Z05_RS21680 (M4Z05_21685)	pilD	4338490..4339290 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
M4Z05_RS21685 (M4Z05_21690)	hrpB	4339338..4341767 (-)	2430	WP_064145607.1	ATP-dependent helicase HrpB	-
M4Z05_RS21690 (M4Z05_21695)	thpR	4341840..4342376 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
M4Z05_RS21695 (M4Z05_21700)	sfsA	4342376..4343092 (+)	717	WP_064149371.1	DNA/RNA nuclease SfsA	-
M4Z05_RS21700 (M4Z05_21705)	dksA	4343255..4343710 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=749167 M4Z05_RS21680 WP_004145898.1 4338490..4339290(+) (pilD) [Klebsiella pneumoniae strain YZ-58]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=749167 M4Z05_RS21680 WP_004145898.1 4338490..4339290(+) (pilD) [Klebsiella pneumoniae strain YZ-58]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425